Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_F07
         (1266 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82053-5|CAB04833.1|  103|Caenorhabditis elegans Hypothetical pr...    31   1.7  
AF016682-3|AAB66186.2|  308|Caenorhabditis elegans Hypothetical ...    31   1.7  
Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr...    29   5.3  
AF016682-5|AAB66184.1|  409|Caenorhabditis elegans Hypothetical ...    29   9.2  

>Z82053-5|CAB04833.1|  103|Caenorhabditis elegans Hypothetical
           protein T26E3.6 protein.
          Length = 103

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +2

Query: 125 DSMCGIFLELSCEKCSIVNDIDVLRRLKNRGPDHLQRKDFISEIGQH 265
           D  CG         C  ++D D  RR  N GPD   +   +  IG H
Sbjct: 50  DKRCGFEYSCMSGVCRYMSDFDAERRFSNFGPDMKCKDSRVCPIGLH 96


>AF016682-3|AAB66186.2|  308|Caenorhabditis elegans Hypothetical
           protein T07D3.6 protein.
          Length = 308

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 542 FIPIIVHCAPREKSGTFPPAGKIVNKMANMQDEMSYF 652
           FI  +    PRE+S  F PA   VN++A ++DE+  F
Sbjct: 198 FIDCLKLKVPREESYVFMPAEAAVNELAQLRDELIEF 234


>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical
           protein F40F12.5 protein.
          Length = 1144

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 159 QLNSKNIPHMLSITVSKRSTAIQSFKWF 76
           ++N     H+L+++V KR    Q+F+WF
Sbjct: 206 RINQDQAIHLLAVSVEKRIEVYQNFEWF 233


>AF016682-5|AAB66184.1|  409|Caenorhabditis elegans Hypothetical
           protein T07D3.4 protein.
          Length = 409

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 542 FIPIIVHCAPREKSGTFPPAGKIVNKMANMQDEMSYF 652
           FI  +    PR+KS  F PA   V ++A ++DE+  F
Sbjct: 169 FIDCLKLEVPRDKSYVFMPAEPAVEELAQLRDELIEF 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,427,438
Number of Sequences: 27780
Number of extensions: 479926
Number of successful extensions: 1128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3526846804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)