Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_F05
(1352 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotei... 107 7e-22
UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46... 100 8e-20
UniRef50_Q9N4G9 Cluster: Probable small nuclear ribonucleoprotei... 83 1e-14
UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein polypep... 79 3e-13
UniRef50_O74966 Cluster: Probable small nuclear ribonucleoprotei... 75 3e-12
UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein... 74 1e-11
UniRef50_Q2URY1 Cluster: Predicted protein; n=1; Aspergillus ory... 73 2e-11
UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is associ... 73 2e-11
UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotei... 72 4e-11
UniRef50_Q8IB57 Cluster: Small nuclear ribonucleoprotein, putati... 68 5e-10
UniRef50_Q6CRN4 Cluster: Similar to sp|P40204 Saccharomyces cere... 64 8e-09
UniRef50_Q4N4E0 Cluster: Small nuclear ribonucleoprotein G, puta... 62 4e-08
UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1... 61 7e-08
UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1; ... 57 9e-07
UniRef50_A7TGG5 Cluster: Putative uncharacterized protein; n=1; ... 57 9e-07
UniRef50_A6QY75 Cluster: Predicted protein; n=2; Fungi/Metazoa g... 56 2e-06
UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein ... 56 3e-06
UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 54 6e-06
UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative; ... 54 9e-06
UniRef50_A7QWV4 Cluster: Chromosome chr13 scaffold_210, whole ge... 53 1e-05
UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3; M... 53 1e-05
UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, wh... 53 2e-05
UniRef50_O74499 Cluster: U6 snRNP-associated protein Lsm7; n=19;... 50 1e-04
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 50 1e-04
UniRef50_Q9UK45 Cluster: U6 snRNA-associated Sm-like protein LSm... 50 1e-04
UniRef50_Q7SDP3 Cluster: Putative uncharacterized protein NCU019... 50 2e-04
UniRef50_A4VCU1 Cluster: Small nuclear ribonucleoprotein E, puta... 49 2e-04
UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1; ... 48 4e-04
UniRef50_Q4Q5H5 Cluster: Small nuclear ribonucleoprotein, putati... 48 4e-04
UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4; T... 48 4e-04
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 48 7e-04
UniRef50_P53905 Cluster: U6 snRNA-associated Sm-like protein LSm... 47 0.001
UniRef50_Q6MY59 Cluster: U6 snrna-associated sm-like protein, pu... 46 0.002
UniRef50_Q4PA95 Cluster: Putative uncharacterized protein; n=1; ... 46 0.002
UniRef50_A7PDU1 Cluster: Chromosome chr11 scaffold_13, whole gen... 46 0.002
UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog... 46 0.002
UniRef50_Q98S49 Cluster: Small nuclear ribonucleoprotein F; n=1;... 46 0.003
UniRef50_Q9UUI1 Cluster: U6 snRNA-associated Sm-like protein LSm... 46 0.003
UniRef50_UPI0000D9E97B Cluster: PREDICTED: LSM7 homolog, U6 smal... 45 0.004
UniRef50_Q6DBW5 Cluster: Zgc:101136; n=6; Euteleostomi|Rep: Zgc:... 45 0.004
UniRef50_Q5CY65 Cluster: Putative uncharacterized protein; n=1; ... 45 0.004
UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11; Saccharomyc... 45 0.004
UniRef50_Q1HQ51 Cluster: LSM1-like protein; n=3; Endopterygota|R... 44 0.007
UniRef50_A3H6D3 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 44 0.007
UniRef50_O75243 Cluster: R30783_1; n=3; Mammalia|Rep: R30783_1 -... 44 0.009
UniRef50_A1DH91 Cluster: Small nuclear ribonucleoprotein (LSM1),... 44 0.009
UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog... 43 0.016
UniRef50_A2GMH6 Cluster: Sm protein; n=3; Trichomonas vaginalis ... 43 0.021
UniRef50_P87173 Cluster: Uncharacterized protein C3D6.08c; n=1; ... 43 0.021
UniRef50_A4S5K5 Cluster: Predicted protein; n=1; Ostreococcus lu... 42 0.028
UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51... 42 0.037
UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10; A... 42 0.049
UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm... 42 0.049
UniRef50_P62312 Cluster: U6 snRNA-associated Sm-like protein LSm... 42 0.049
UniRef50_A0C1J5 Cluster: Chromosome undetermined scaffold_142, w... 41 0.064
UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18... 41 0.064
UniRef50_Q40942 Cluster: Small nucleolar ribonucleoprotein E hom... 41 0.085
UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albica... 41 0.085
UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 41 0.085
UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albica... 40 0.11
UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE, pu... 40 0.11
UniRef50_Q2FM21 Cluster: Like-Sm ribonucleoprotein, core; n=4; M... 40 0.11
UniRef50_Q4MZX3 Cluster: Small nuclear ribonucleoprotein, putati... 40 0.15
UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1; Ae... 40 0.15
UniRef50_Q4V6D7 Cluster: IP05148p; n=2; Drosophila melanogaster|... 40 0.20
UniRef50_Q20229 Cluster: Putative uncharacterized protein lsm-1;... 40 0.20
UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein, ... 39 0.26
UniRef50_Q6BPZ2 Cluster: Debaryomyces hansenii chromosome E of s... 39 0.26
UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4; Th... 39 0.26
UniRef50_Q01J34 Cluster: OSIGBa0140O07.9 protein; n=5; Oryza sat... 39 0.34
UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia... 39 0.34
UniRef50_A4VDT4 Cluster: Putative uncharacterized protein; n=1; ... 39 0.34
UniRef50_Q9AVY1 Cluster: Putative small nuclear ribonucleoprotei... 38 0.45
UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2; ... 38 0.45
UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lambl... 38 0.45
UniRef50_Q5K712 Cluster: U6 snRNA-associated sm-like protein lsm... 38 0.45
UniRef50_A1CE19 Cluster: LSM domain protein; n=3; Trichocomaceae... 38 0.45
UniRef50_P34659 Cluster: Probable small nuclear ribonucleoprotei... 38 0.45
UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;... 38 0.60
UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1; ... 38 0.60
UniRef50_A6RGJ8 Cluster: Predicted protein; n=1; Ajellomyces cap... 38 0.60
UniRef50_A6R7U2 Cluster: Predicted protein; n=2; Eurotiomycetida... 38 0.60
UniRef50_O29885 Cluster: SnRNP, putative; n=1; Archaeoglobus ful... 38 0.60
UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm... 38 0.79
UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm... 38 0.79
UniRef50_Q9Y4Y9 Cluster: U6 snRNA-associated Sm-like protein LSm... 38 0.79
UniRef50_Q3LW01 Cluster: MRNA splicing factor; n=1; Bigelowiella... 37 1.0
UniRef50_A2Y859 Cluster: Putative uncharacterized protein; n=2; ... 37 1.0
UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core, ... 37 1.0
UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep: A... 37 1.0
UniRef50_A3LX11 Cluster: Predicted protein; n=3; Saccharomycetac... 37 1.0
UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protei... 37 1.0
UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm... 37 1.0
UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;... 37 1.0
UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putati... 37 1.4
UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm... 37 1.4
UniRef50_Q2R066 Cluster: Small nuclear ribonucleoprotein F, puta... 36 1.8
UniRef50_Q8IU42 Cluster: Formin homology protein A; n=2; Dictyos... 36 1.8
UniRef50_Q4Q9J1 Cluster: Lsm7p protein, putative; n=6; Trypanoso... 36 2.4
UniRef50_Q8SRW7 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN G; n=1;... 36 2.4
UniRef50_Q6CGS0 Cluster: Similar to sp|P47017 Saccharomyces cere... 36 2.4
UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1; Filobas... 36 2.4
UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1; ... 36 2.4
UniRef50_Q24297 Cluster: Small nuclear ribonucleoprotein F; n=7;... 36 2.4
UniRef50_Q9SUM2 Cluster: Probable small nuclear ribonucleoprotei... 36 2.4
UniRef50_UPI00015B4AC1 Cluster: PREDICTED: similar to conserved ... 36 3.2
UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep: S... 36 3.2
UniRef50_Q5CQ90 Cluster: Small nuclear ribonucleoprotein U6; n=1... 36 3.2
UniRef50_Q8SQK1 Cluster: U6 snRNA-ASSOCIATED RIBONUCLEOPROTEIN; ... 36 3.2
UniRef50_UPI0000499412 Cluster: U6 snRNA-associated Sm-like prot... 35 4.2
UniRef50_Q3LWL6 Cluster: MRNA splicing protein; n=1; Bigelowiell... 35 4.2
UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm... 35 4.2
UniRef50_A0R2X6 Cluster: Putative uncharacterized protein; n=2; ... 35 5.6
UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, wh... 35 5.6
UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167, w... 35 5.6
UniRef50_A3DMZ9 Cluster: Like-Sm ribonucleoprotein, core; n=1; S... 35 5.6
UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putati... 34 7.4
UniRef50_Q4PB34 Cluster: Putative uncharacterized protein; n=3; ... 34 7.4
UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1; T... 34 7.4
UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm... 34 7.4
UniRef50_A7ARJ0 Cluster: Small nuclear ribonucleoprotein F, puta... 34 9.8
UniRef50_A2EQ40 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 34 9.8
UniRef50_A2DLB2 Cluster: Sm protein; n=2; Trichomonas vaginalis ... 34 9.8
UniRef50_Q0UQD0 Cluster: Putative uncharacterized protein; n=1; ... 34 9.8
UniRef50_O59920 Cluster: Surface glycoprotein A; n=25; Pneumocys... 34 9.8
UniRef50_P04280 Cluster: Basic salivary proline-rich protein 1 p... 34 9.8
>UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotein
G; n=14; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein G - Drosophila melanogaster (Fruit
fly)
Length = 76
Score = 107 bits (257), Expect = 7e-22
Identities = 46/67 (68%), Positives = 59/67 (88%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIM 312
K K++ +KLN GRAVTG+LRGFDPFMN+VLD++VEECKD +NN+GMVVIRGNSI+M
Sbjct: 10 KKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVM 69
Query: 313 LESLDRL 333
+E+LDR+
Sbjct: 70 VEALDRV 76
Score = 37.5 bits (83), Expect = 0.79
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +3
Query: 105 MSKAHPPELKKFMDKKIVNKAECG 176
MSKAHPPE+KK+MDK+++ K G
Sbjct: 1 MSKAHPPEVKKYMDKRMMLKLNGG 24
>UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46;
Eukaryota|Rep: Small nuclear ribonucleoprotein G - Homo
sapiens (Human)
Length = 76
Score = 100 bits (240), Expect = 8e-20
Identities = 47/67 (70%), Positives = 55/67 (82%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIM 312
K KKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMVVIRGNSIIM
Sbjct: 10 KKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIM 69
Query: 313 LESLDRL 333
LE+L+R+
Sbjct: 70 LEALERV 76
Score = 40.3 bits (90), Expect = 0.11
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +3
Query: 105 MSKAHPPELKKFMDKKIVNKAECG 176
MSKAHPPELKKFMDKK+ K G
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGG 24
>UniRef50_Q9N4G9 Cluster: Probable small nuclear ribonucleoprotein
G; n=16; Bilateria|Rep: Probable small nuclear
ribonucleoprotein G - Caenorhabditis elegans
Length = 77
Score = 83.4 bits (197), Expect = 1e-14
Identities = 36/67 (53%), Positives = 51/67 (76%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIM 312
K K++ +KLN R V+G+LRGFDPFMN+V+DE+VE KDG N+GM VIRGNS+++
Sbjct: 10 KKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGNSVVI 69
Query: 313 LESLDRL 333
+E +R+
Sbjct: 70 MEPKERI 76
Score = 34.7 bits (76), Expect = 5.6
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +3
Query: 105 MSKAHPPELKKFMDKKI 155
MSK HPPELKK+MDK++
Sbjct: 1 MSKTHPPELKKYMDKEM 17
>UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein
polypeptide G; n=1; Hyacinthus orientalis|Rep: Small
nuclear ribonucleoprotein polypeptide G - Hyacinthus
orientalis (Common hyacinth)
Length = 96
Score = 79.0 bits (186), Expect = 3e-13
Identities = 36/61 (59%), Positives = 47/61 (77%)
Frame = +1
Query: 145 TKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESL 324
T KL IKLNA R V G LRGFD FMNLV+D ++ E +N++GMVVIRGNS++M+E+L
Sbjct: 31 TSKLQIKLNANRVVVGTLRGFDQFMNLVIDNTM-EVNGNDKNDIGMVVIRGNSVVMIEAL 89
Query: 325 D 327
+
Sbjct: 90 E 90
>UniRef50_O74966 Cluster: Probable small nuclear ribonucleoprotein
G; n=7; Ascomycota|Rep: Probable small nuclear
ribonucleoprotein G - Schizosaccharomyces pombe (Fission
yeast)
Length = 77
Score = 75.4 bits (177), Expect = 3e-12
Identities = 31/62 (50%), Positives = 50/62 (80%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLD 327
+++ ++LN R V GVLRG+D F+N+VL++S+EE DG++ +G V IRGNS+IM+E+LD
Sbjct: 15 RQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSVAIRGNSVIMIETLD 74
Query: 328 RL 333
++
Sbjct: 75 KM 76
>UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 85
Score = 73.7 bits (173), Expect = 1e-11
Identities = 32/62 (51%), Positives = 46/62 (74%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLD 327
KKL+IKLN R V G+LRGFD FMN+ L ++VE ++ +GMV+IRGNSI+++E L+
Sbjct: 17 KKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVIIRGNSILLMEPLE 76
Query: 328 RL 333
+
Sbjct: 77 SM 78
>UniRef50_Q2URY1 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 122
Score = 72.9 bits (171), Expect = 2e-11
Identities = 32/57 (56%), Positives = 45/57 (78%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLE 318
K++ +LN R V G+LRG+D FMN+VLDE+ EE + G++ +GMVVIRGNS++MLE
Sbjct: 3 KRVFCQLNGNRKVIGILRGYDVFMNIVLDEAFEEKQGGEKVAIGMVVIRGNSVVMLE 59
>UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is
associated with small nuclear ribonucleoproteins; n=1;
Aspergillus niger|Rep: Function: snRPG of H. sapiens is
associated with small nuclear ribonucleoproteins -
Aspergillus niger
Length = 105
Score = 72.5 bits (170), Expect = 2e-11
Identities = 31/57 (54%), Positives = 45/57 (78%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLE 318
K++ +LN R V G+LRG+D FMN+VLDE+ EE + G++ +GM+VIRGNS++MLE
Sbjct: 25 KRVFCQLNGNRKVIGILRGYDVFMNIVLDEAFEEKQGGEKVAIGMIVIRGNSVVMLE 81
>UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Ostreococcus tauri|Rep: Putative small nuclear
ribonucleoprotein E - Ostreococcus tauri
Length = 101
Score = 71.7 bits (168), Expect = 4e-11
Identities = 31/60 (51%), Positives = 47/60 (78%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLD 327
KKL ++LN R+VTG+LRGFD F+NLVLD+S + ++ +GMVV+RGNS++ +E+L+
Sbjct: 33 KKLRLRLNGNRSVTGILRGFDQFLNLVLDDSTNDTTT-EKTPMGMVVVRGNSVVSMEALE 91
>UniRef50_Q8IB57 Cluster: Small nuclear ribonucleoprotein, putative;
n=8; Eukaryota|Rep: Small nuclear ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 83
Score = 68.1 bits (159), Expect = 5e-10
Identities = 34/62 (54%), Positives = 46/62 (74%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLD 327
K+L I LN R V G+LRG+D FMNLVLD ++E KD ++ ++G+VVIRGNSI E LD
Sbjct: 20 KRLQIYLNGNRQVVGILRGYDTFMNLVLDNTMEIKKD-EQIDIGVVVIRGNSISYWECLD 78
Query: 328 RL 333
++
Sbjct: 79 KV 80
>UniRef50_Q6CRN4 Cluster: Similar to sp|P40204 Saccharomyces
cerevisiae YFL017wa SNP2 snRNP G protein; n=1;
Kluyveromyces lactis|Rep: Similar to sp|P40204
Saccharomyces cerevisiae YFL017wa SNP2 snRNP G protein -
Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 71
Score = 64.1 bits (149), Expect = 8e-09
Identities = 29/67 (43%), Positives = 43/67 (64%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIM 312
K KKL ++LN R + G+LRG+D F+NLVLD ++ ++G+ V+RGNSI+
Sbjct: 5 KQYMDKKLILQLNGNRKIIGILRGYDAFLNLVLDNPIQIFEEGEVQMGPQTVVRGNSIVS 64
Query: 313 LESLDRL 333
+E LD L
Sbjct: 65 IEPLDSL 71
>UniRef50_Q4N4E0 Cluster: Small nuclear ribonucleoprotein G,
putative; n=2; Piroplasmida|Rep: Small nuclear
ribonucleoprotein G, putative - Theileria parva
Length = 86
Score = 61.7 bits (143), Expect = 4e-08
Identities = 30/58 (51%), Positives = 42/58 (72%)
Frame = +1
Query: 160 IKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLDRL 333
+ LN R V GVLRG+D FMN+VLD ++E + Q ++G+VV+RGNSI+ E LDR+
Sbjct: 27 VHLNGSRHVVGVLRGYDTFMNIVLDNALEVVGEDQ-VDLGVVVVRGNSILYWECLDRV 83
>UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1;
Filobasidiella neoformans|Rep: U6 snRNA binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 131
Score = 60.9 bits (141), Expect = 7e-08
Identities = 26/61 (42%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSIIMLESL 324
K + +K GR TG+L+G+D MNLV+D+ VEE +DG+ ++G+VV+RG +I+++
Sbjct: 35 KSIRVKFMGGREATGILKGYDQLMNLVMDDVVEEYEDGRPTRSLGLVVLRGPNIVLVSPT 94
Query: 325 D 327
D
Sbjct: 95 D 95
>UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 134
Score = 57.2 bits (132), Expect = 9e-07
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 10/72 (13%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC----------KDGQRNNVGMVVIRG 297
K++++ + GR + G LRGFD F+NLV+DE++E+ +DG R G VV+RG
Sbjct: 62 KRIAVNIQGGRKIQGTLRGFDMFLNLVVDEAIEQVHPEAGNPNVWQDGDR--CGTVVVRG 119
Query: 298 NSIIMLESLDRL 333
NS+ LE+L+ +
Sbjct: 120 NSVTSLEALENV 131
>UniRef50_A7TGG5 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 126
Score = 57.2 bits (132), Expect = 9e-07
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 9/68 (13%)
Frame = +1
Query: 151 KLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD---------GQRNNVGMVVIRGNS 303
K+ +KL GR VTGVL+G+DP M LVLDE+VE +D Q ++G+ VIRG
Sbjct: 48 KIRVKLMGGRLVTGVLKGYDPLMTLVLDETVEYLRDLEDSSIILKDQTRDLGLTVIRGTV 107
Query: 304 IIMLESLD 327
++ L +D
Sbjct: 108 LLSLSPVD 115
>UniRef50_A6QY75 Cluster: Predicted protein; n=2; Fungi/Metazoa
group|Rep: Predicted protein - Ajellomyces capsulatus
NAm1
Length = 171
Score = 56.0 bits (129), Expect = 2e-06
Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRGNSIIML 315
K++ +K N GR VTG L+G+D MNLVLD+ E +D + N ++G++V RG ++++
Sbjct: 93 KEVCVKFNGGREVTGTLKGYDQLMNLVLDDVREVMRDDEGNQTTRSLGLIVARGTLLVLI 152
Query: 316 ESLD 327
+D
Sbjct: 153 SPVD 156
>UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein G;
n=2; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein G - Entamoeba histolytica HM-1:IMSS
Length = 81
Score = 55.6 bits (128), Expect = 3e-06
Identities = 26/67 (38%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECK-DGQRN-NVGMVVIRGNSI 306
K+ K++ +K++ R++ GVL G+D +MNLVLDE+ + D ++ +GM++I GNSI
Sbjct: 9 KHYLEKRILVKIHGKRSIIGVLSGYDEYMNLVLDEAYDASNPDTDKHIPIGMIMILGNSI 68
Query: 307 IMLESLD 327
+ +E++D
Sbjct: 69 LSVETID 75
>UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 100
Score = 54.4 bits (125), Expect = 6e-06
Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 8/66 (12%)
Frame = +1
Query: 160 IKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDG--------QRNNVGMVVIRGNSIIML 315
+KL+ GR VTG L+G+D +NLVLDE++E +D + +G++V RG S++++
Sbjct: 20 VKLSGGREVTGTLKGYDQLLNLVLDEAIEHLRDAEDALKISDETRALGLLVCRGTSVMVV 79
Query: 316 ESLDRL 333
+LD +
Sbjct: 80 SALDSM 85
>UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative;
n=2; Theileria|Rep: U6 snRNA-associated protein,
putative - Theileria parva
Length = 104
Score = 54.0 bits (124), Expect = 9e-06
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 8/84 (9%)
Frame = +1
Query: 88 LKSTLQCQKHIHQN*KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--- 258
+KS + KH++ K++ +K + GR V GVLRG D NLVLD++VE KD
Sbjct: 11 VKSVINLNKHLN--------KEVYVKFSGGREVKGVLRGHDAMSNLVLDDTVEYLKDSSD 62
Query: 259 -----GQRNNVGMVVIRGNSIIML 315
G++ N+G++V RG S+ ++
Sbjct: 63 SSKLTGEKRNLGLLVARGTSVTVV 86
>UniRef50_A7QWV4 Cluster: Chromosome chr13 scaffold_210, whole
genome shotgun sequence; n=8; Eukaryota|Rep: Chromosome
chr13 scaffold_210, whole genome shotgun sequence -
Vitis vinifera (Grape)
Length = 113
Score = 53.2 bits (122), Expect = 1e-05
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 8/68 (11%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGMVVIRGNS 303
K + +KL GR VTG L+G+D +NLVLDE+VE +D Q +G++V RG +
Sbjct: 31 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPQKTTDQTRRLGLIVCRGTA 90
Query: 304 IIMLESLD 327
++++ D
Sbjct: 91 VMLVSPTD 98
>UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 80
Score = 53.2 bits (122), Expect = 1e-05
Identities = 24/52 (46%), Positives = 37/52 (71%)
Frame = +1
Query: 160 IKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIML 315
I L GR + GVL+G+D MNLVLD++ EE GQ ++G ++IRG+++I +
Sbjct: 25 ISLKGGREIKGVLQGYDVHMNLVLDKA-EEIVQGQAQSIGTLIIRGDNVIYI 75
>UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_33,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 104
Score = 52.8 bits (121), Expect = 2e-05
Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 17/79 (21%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE-------ECKDG----------QRNNV 276
K+L IKLNA R + G + GFD FMNLVLD E E KD Q ++
Sbjct: 24 KRLKIKLNAKRTIIGTVIGFDIFMNLVLDHCKELIPGQGAENKDNLYPGFSNVTDQLVDI 83
Query: 277 GMVVIRGNSIIMLESLDRL 333
G ++RGNSIIM E LD++
Sbjct: 84 GQAIVRGNSIIMWECLDKV 102
>UniRef50_O74499 Cluster: U6 snRNP-associated protein Lsm7; n=19;
Eukaryota|Rep: U6 snRNP-associated protein Lsm7 -
Schizosaccharomyces pombe (Fission yeast)
Length = 113
Score = 50.4 bits (115), Expect = 1e-04
Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 7/67 (10%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD-------GQRNNVGMVVIRGNSI 306
+++ GR +TG+L+GFD MNLVLD+ E+ ++ G +G+VV+RG ++
Sbjct: 34 QRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTL 93
Query: 307 IMLESLD 327
+++ +D
Sbjct: 94 VLIAPMD 100
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 50.4 bits (115), Expect = 1e-04
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +1
Query: 160 IKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIML 315
IKL + + G L GFD MNL+LD S E +G+ +G +V+RG++++M+
Sbjct: 20 IKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAEGEAKGLGSIVVRGDNVVMI 71
>UniRef50_Q9UK45 Cluster: U6 snRNA-associated Sm-like protein LSm7;
n=26; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm7 - Homo sapiens (Human)
Length = 103
Score = 50.4 bits (115), Expect = 1e-04
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGMVVIRGNS 303
K + +K GR +G+L+GFDP +NLVLD ++E +D +G+VV RG S
Sbjct: 21 KTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTS 80
Query: 304 IIML 315
++++
Sbjct: 81 VVLI 84
>UniRef50_Q7SDP3 Cluster: Putative uncharacterized protein
NCU01930.1; n=2; Sordariomycetes|Rep: Putative
uncharacterized protein NCU01930.1 - Neurospora crassa
Length = 132
Score = 49.6 bits (113), Expect = 2e-04
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIM 312
K +++++K N GR VTG L+G+D MNLVLD+ E + G+VV RG +++
Sbjct: 59 KKYMDQRITVKFNGGREVTGTLKGYDALMNLVLDDVQEAVR-------GLVVARGTLLVV 111
Query: 313 LESLD 327
+ +D
Sbjct: 112 ISPVD 116
>UniRef50_A4VCU1 Cluster: Small nuclear ribonucleoprotein E,
putative; n=1; Tetrahymena thermophila SB210|Rep: Small
nuclear ribonucleoprotein E, putative - Tetrahymena
thermophila SB210
Length = 140
Score = 49.2 bits (112), Expect = 2e-04
Identities = 19/49 (38%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Frame = +1
Query: 190 GVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESLDRL 333
G + GFD +MN+VLDE+ E +CK Q+ +G ++++G +I ++ +L++L
Sbjct: 40 GKIIGFDEYMNMVLDETSEVDCKTNQKREIGRILLKGENITLIRNLEQL 88
>UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 129
Score = 48.4 bits (110), Expect = 4e-04
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDG---QRNNVGMVVIRGNSIIMLE 318
KKL + L GR G++R FD F N+VL +++E G N+G+ IRG+++++L
Sbjct: 11 KKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVILG 70
Query: 319 SLD 327
+D
Sbjct: 71 EID 73
>UniRef50_Q4Q5H5 Cluster: Small nuclear ribonucleoprotein, putative;
n=5; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 81
Score = 48.4 bits (110), Expect = 4e-04
Identities = 23/65 (35%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDG-----QRNNVGMVVIRGNSIIM 312
K++ +K+ GR+++GVLRG D M++VL ++++E ++ R +G VIRG++I+
Sbjct: 16 KRIVVKIQGGRSISGVLRGVDEHMSIVLHDAMDETRNAAVSEEARLALGTTVIRGSAIVE 75
Query: 313 LESLD 327
+ S D
Sbjct: 76 IVSAD 80
>UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4;
Thermoplasmatales|Rep: Small nuclear ribonucleoprotein -
Thermoplasma volcanium
Length = 71
Score = 48.4 bits (110), Expect = 4e-04
Identities = 22/61 (36%), Positives = 39/61 (63%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIM 312
+ S K++S+ L R + G L G+D +MN+VLD+ V+E + +G VVIRG++++
Sbjct: 9 EESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDD-VDENSENVSRKLGTVVIRGSNVVR 67
Query: 313 L 315
+
Sbjct: 68 I 68
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 47.6 bits (108), Expect = 7e-04
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +1
Query: 136 NSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSIIM 312
NS + IKL R GVL+ FD MNLVL+++ EE +DG+ +G V+IRG++I+
Sbjct: 20 NSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDA-EELEDGEVTRRLGTVLIRGDNIVY 78
Query: 313 L 315
+
Sbjct: 79 I 79
>UniRef50_P53905 Cluster: U6 snRNA-associated Sm-like protein LSm7;
n=6; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm7 - Saccharomyces cerevisiae (Baker's yeast)
Length = 115
Score = 46.8 bits (106), Expect = 0.001
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Frame = +1
Query: 151 KLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECK--DGQRN---------NVGMVVIRG 297
K+ +KL G+ V GVL+G+D MNLVLD++VE D + N +G+ VIRG
Sbjct: 37 KIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKLGLTVIRG 96
Query: 298 NSIIMLESLD 327
++ L S +
Sbjct: 97 TILVSLSSAE 106
>UniRef50_Q6MY59 Cluster: U6 snrna-associated sm-like protein,
putative (Small nuclear ribonucleoprotein (LSM7),
putative); n=2; Pezizomycotina|Rep: U6 snrna-associated
sm-like protein, putative (Small nuclear
ribonucleoprotein (LSM7), putative) - Aspergillus
fumigatus (Sartorya fumigata)
Length = 134
Score = 46.4 bits (105), Expect = 0.002
Identities = 21/56 (37%), Positives = 34/56 (60%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIML 315
K++ +K N GR V+G+L+G+D MNLVLD+ E + N++ + NS I +
Sbjct: 61 KEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMRGKSLNDITKLDEVSNSAIQM 116
>UniRef50_Q4PA95 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 148
Score = 46.4 bits (105), Expect = 0.002
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNV--GMVVIRGNSIIMLE 318
KK+ + L G+ + GVLR +D F NLVL ++VE G R +V G+ ++RG +++++
Sbjct: 24 KKMLVVLRDGKKLIGVLRSYDQFANLVLQDTVERVFVGNRYGDVARGIFLVRGENVVLMG 83
Query: 319 SLD 327
+D
Sbjct: 84 EID 86
>UniRef50_A7PDU1 Cluster: Chromosome chr11 scaffold_13, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr11 scaffold_13, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 242
Score = 46.0 bits (104), Expect = 0.002
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ---RNNVGMVVIRGNSIIMLE 318
KKL + L GR + GVLR FD F N VL+ + E G +G+ VIRG ++++L
Sbjct: 21 KKLLVLLRDGRKLLGVLRSFDQFANAVLEGACERAIVGDIYCDIPLGLYVIRGENVVLLG 80
Query: 319 SLD 327
LD
Sbjct: 81 ELD 83
Score = 44.4 bits (100), Expect = 0.007
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ---RNNVGMVVIRGNSIIMLE 318
+KL + L GR + GVLR FD F N VL+ + E G +G+ VIRG ++++L
Sbjct: 135 EKLLVLLRDGRKLLGVLRSFDQFANAVLEGACERAIVGDIYCDIPLGLYVIRGENVVLLG 194
Query: 319 SLD 327
LD
Sbjct: 195 ELD 197
>UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog;
n=4; Pyrobaculum|Rep: Small nuclear ribonucleoprotein
homolog - Pyrobaculum aerophilum
Length = 85
Score = 46.0 bits (104), Expect = 0.002
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSIIMLES 321
K++ +L G AV GVL +D MNLVL+++ E K G+ + G +VIRG+ +I + +
Sbjct: 22 KEIIARLKGGVAVKGVLTAYDGCMNLVLNDAAELDKSGEPKTRYGRIVIRGSQVIYVST 80
>UniRef50_Q98S49 Cluster: Small nuclear ribonucleoprotein F; n=1;
Guillardia theta|Rep: Small nuclear ribonucleoprotein F
- Guillardia theta (Cryptomonas phi)
Length = 73
Score = 45.6 bits (103), Expect = 0.003
Identities = 20/60 (33%), Positives = 36/60 (60%)
Frame = +1
Query: 136 NSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIML 315
N++ K + +KL G + TG+ G D +MN++LD E + +G+V+IR N+I+ +
Sbjct: 9 NNYNKNVFVKLKWGSSYTGIFIGSDNYMNIILDSCSEVITEQNLGFLGLVLIRCNNILFI 68
>UniRef50_Q9UUI1 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=33; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm6 - Schizosaccharomyces pombe (Fission yeast)
Length = 75
Score = 45.6 bits (103), Expect = 0.003
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV-GMVVIRGNSIIMLESL 324
KK+ I+L++G G+L D +MNL L E EE +G++ NV G IRGN+++ + +L
Sbjct: 15 KKVLIRLSSGVDYKGILSCLDGYMNLAL-ERTEEYVNGKKTNVYGDAFIRGNNVLYVSAL 73
Query: 325 D 327
D
Sbjct: 74 D 74
>UniRef50_UPI0000D9E97B Cluster: PREDICTED: LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae); n=1; Macaca
mulatta|Rep: PREDICTED: LSM7 homolog, U6 small nuclear
RNA associated (S. cerevisiae) - Macaca mulatta
Length = 123
Score = 45.2 bits (102), Expect = 0.004
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD 258
K + +K GR +G+L+GFDP +NLVLD ++E +D
Sbjct: 21 KTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRD 57
>UniRef50_Q6DBW5 Cluster: Zgc:101136; n=6; Euteleostomi|Rep:
Zgc:101136 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 133
Score = 45.2 bits (102), Expect = 0.004
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNV--GMVVIRGNSIIMLE 318
KK + L GR + G+LR D F NLVL ++VE G++ ++ G+ V+RG ++++L
Sbjct: 16 KKHLVLLRDGRTLIGILRSIDQFANLVLHQTVERIHVGKKFGDIPRGIFVVRGENVVLLG 75
Query: 319 SLD 327
+D
Sbjct: 76 EVD 78
>UniRef50_Q5CY65 Cluster: Putative uncharacterized protein; n=1;
Cryptosporidium parvum Iowa II|Rep: Putative
uncharacterized protein - Cryptosporidium parvum Iowa II
Length = 73
Score = 45.2 bits (102), Expect = 0.004
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 246
K++ +KL GR V G+LRGFD NLVLDE+VE
Sbjct: 30 KEIKVKLCGGREVIGILRGFDAVTNLVLDETVE 62
>UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11;
Saccharomycetales|Rep: Sm-like protein LSm1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 172
Score = 45.2 bits (102), Expect = 0.004
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Frame = +1
Query: 136 NSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV-----GMVVIRGN 300
+S +K+ + L GR + GVLR FD + NL+L + VE + N G+ +IRG
Sbjct: 48 SSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGE 107
Query: 301 SIIMLESLD 327
+++ML +D
Sbjct: 108 NVVMLGEVD 116
>UniRef50_Q1HQ51 Cluster: LSM1-like protein; n=3; Endopterygota|Rep:
LSM1-like protein - Bombyx mori (Silk moth)
Length = 138
Score = 44.4 bits (100), Expect = 0.007
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGNSIIMLE 318
KKL + L GR + G LR D F NLVL +++E G+ G+ ++RG ++++L
Sbjct: 20 KKLMVLLRDGRTLIGYLRCVDQFANLVLHKTIERIHVGKEYGDIPRGIFIVRGENVVLLG 79
Query: 319 SLDR 330
+D+
Sbjct: 80 EIDK 83
>UniRef50_A3H6D3 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Caldivirga maquilingensis IC-167|Rep: Like-Sm
ribonucleoprotein, core - Caldivirga maquilingensis
IC-167
Length = 86
Score = 44.4 bits (100), Expect = 0.007
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV----GMVVIRGNSIIML 315
K + +KL AGR ++G LR D MN+VLD++ E D + N V G V+IRGN ++ +
Sbjct: 22 KSVVVKLKAGRVLSGTLRFIDQCMNIVLDDAEE--LDTRTNQVIVRYGKVLIRGNQVLYV 79
Query: 316 ESLDRL 333
+ L
Sbjct: 80 SVRNEL 85
>UniRef50_O75243 Cluster: R30783_1; n=3; Mammalia|Rep: R30783_1 -
Homo sapiens (Human)
Length = 145
Score = 44.0 bits (99), Expect = 0.009
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 8/55 (14%)
Frame = +1
Query: 175 GRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGMVVIRGNSIIML 315
GR +G+L+GFDP +NLVLD ++E +D +G+VV RG S++++
Sbjct: 72 GRPRSGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLI 126
>UniRef50_A1DH91 Cluster: Small nuclear ribonucleoprotein (LSM1),
putative; n=11; Pezizomycotina|Rep: Small nuclear
ribonucleoprotein (LSM1), putative - Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 177
Score = 44.0 bits (99), Expect = 0.009
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN---NVGMVVIRGNSIIMLE 318
KKL + L GR + GVLR +D F NLVL +++E G G+ ++RG ++++L
Sbjct: 59 KKLVLVLRDGRKLIGVLRSWDQFANLVLQDTIERLYAGNLYADIPRGIFLVRGENVLLLG 118
Query: 319 SLD 327
+D
Sbjct: 119 EID 121
>UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog;
n=5; Thermoproteaceae|Rep: Small nuclear
ribonucleoprotein homolog - Pyrobaculum aerophilum
Length = 80
Score = 43.2 bits (97), Expect = 0.016
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIM 312
++S K++ +KL + G+LR FD +NL+L E EE DG G +V+RG +++
Sbjct: 17 QDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLL-EDAEEIIDGNVYKRGTMVVRGENVLF 75
Query: 313 L 315
+
Sbjct: 76 I 76
>UniRef50_A2GMH6 Cluster: Sm protein; n=3; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 81
Score = 42.7 bits (96), Expect = 0.021
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVL-DESVEECKDGQRNNVGMVVIRGNSII 309
K KK+ I N R V+G+L GFD FMNL + D ++ D VIRG I+
Sbjct: 16 KGHLQKKVKIMSNKDREVSGILTGFDHFMNLTIRDAQIKTPYDKAPVFCNSCVIRGTMIL 75
Query: 310 MLESLD 327
+E+L+
Sbjct: 76 SVETLN 81
>UniRef50_P87173 Cluster: Uncharacterized protein C3D6.08c; n=1;
Schizosaccharomyces pombe|Rep: Uncharacterized protein
C3D6.08c - Schizosaccharomyces pombe (Fission yeast)
Length = 140
Score = 42.7 bits (96), Expect = 0.021
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC-KDGQRNNV--GMVVIRGNSIIMLE 318
+K+ + L G+ + G+LR FD F NL+L ++E D ++ G+ ++RG ++++L
Sbjct: 22 RKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGENVVLLG 81
Query: 319 SLD 327
LD
Sbjct: 82 ELD 84
>UniRef50_A4S5K5 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 126
Score = 42.3 bits (95), Expect = 0.028
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGNSIIML 315
K+L + L G + G LR FD F N+VL+ +VE G+ + +G+ ++RG +++++
Sbjct: 19 KRLLVALRDGSNIIGTLRSFDQFANIVLESAVERIIVGKMFSDIPLGLYIVRGENVVLM 77
>UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Homo
sapiens (Human)
Length = 92
Score = 41.9 bits (94), Expect = 0.037
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 184 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 324
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10;
Archaea|Rep: Putative snRNP Sm-like protein -
Archaeoglobus fulgidus
Length = 77
Score = 41.5 bits (93), Expect = 0.049
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +1
Query: 160 IKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNVGMVVIRGNSIIML 315
++L GR G L G+D MNLVL ++ EE ++G+ VG VVIRG++++ +
Sbjct: 19 VRLKGGREFRGTLDGYDIHMNLVLLDA-EEIQNGEVVRKVGSVVIRGDTVVFV 70
>UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=23; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm8 - Homo sapiens (Human)
Length = 96
Score = 41.5 bits (93), Expect = 0.049
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRGN 300
+N + +++ + GR + G L+GFD +NL+LDES E + +G+ ++RG+
Sbjct: 6 ENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGD 65
Query: 301 SIIMLESLD 327
++ ++ +D
Sbjct: 66 NVAVIGEID 74
>UniRef50_P62312 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=22; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm6 - Homo sapiens (Human)
Length = 80
Score = 41.5 bits (93), Expect = 0.049
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 160 IKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSIIMLESLDR 330
+KLN+G GVL D +MN+ L E EE +GQ +N G IRGN+++ + + R
Sbjct: 22 VKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKR 78
>UniRef50_A0C1J5 Cluster: Chromosome undetermined scaffold_142,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_142,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 95
Score = 41.1 bits (92), Expect = 0.064
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +1
Query: 169 NAGRAVTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESLD 327
N + G L GFD ++NLVLD +VE + K +G ++++G +I+++ +L+
Sbjct: 38 NDNLRIQGKLAGFDEYLNLVLDRAVEYDRKTKATKELGKILLKGENIVLVRTLE 91
>UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Danio
rerio (Zebrafish) (Brachydanio rerio)
Length = 92
Score = 41.1 bits (92), Expect = 0.064
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 184 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 324
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 90
>UniRef50_Q40942 Cluster: Small nucleolar ribonucleoprotein E
homolog; n=2; Bigelowiella natans|Rep: Small nucleolar
ribonucleoprotein E homolog - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 71
Score = 40.7 bits (91), Expect = 0.085
Identities = 20/59 (33%), Positives = 36/59 (61%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESL 324
+++ I+L + G LRGFD F+N+VL++S + N ++++RGNSI+ + L
Sbjct: 16 EEIQIQLKNKLCLKGTLRGFDQFLNIVLEKS---SYSKESNYFDILIVRGNSIMSVSKL 71
>UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albicans
CaSMX4 U6 snRNA-associated Sm-like protein; n=2;
Saccharomycetaceae|Rep: Similar to CA3420|CaSMX4 Candida
albicans CaSMX4 U6 snRNA-associated Sm-like protein -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 88
Score = 40.7 bits (91), Expect = 0.085
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Frame = +1
Query: 160 IKLNAGRAVTGVLRGFDPFMNLVLDESVE---ECKDGQR---NNVGMVVIRGNSIIMLES 321
+KL R + G L+G+D N++L ++VE + +GQ N MV +RG+S+I++
Sbjct: 27 VKLRGAREMKGKLQGYDSHCNMILSDAVEYIYDVPEGQEPVTKNTDMVFVRGDSVILISP 86
Query: 322 LD 327
++
Sbjct: 87 VN 88
>UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)
homolog; n=1; Methanopyrus kandleri|Rep: Small nuclear
ribonucleoprotein (SnRNP) homolog - Methanopyrus
kandleri
Length = 73
Score = 40.7 bits (91), Expect = 0.085
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = +1
Query: 160 IKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIML 315
++L G+ + G L FD +NLVLD+ VE +D + +G V+IRG+S+ ++
Sbjct: 17 VELKTGKTLRGRLVSFDGHLNLVLDDCVEIDEDSE-VRLGRVLIRGDSVTLI 67
>UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albicans
CaLSM6; n=3; Ascomycota|Rep: Similar to CA5853|CaLSM6
Candida albicans CaLSM6 - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 84
Score = 40.3 bits (90), Expect = 0.11
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +1
Query: 154 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 303
++++L+ G G L+ D +MN+VLDE+ E Q N G V IRGN+
Sbjct: 29 VTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQARNYGDVFIRGNN 78
>UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE,
putative; n=12; Pezizomycotina|Rep: Small nuclear
ribonucleoprotein SmE, putative - Aspergillus clavatus
Length = 95
Score = 40.3 bits (90), Expect = 0.11
Identities = 16/52 (30%), Positives = 37/52 (71%), Gaps = 5/52 (9%)
Frame = +1
Query: 184 VTGVLRGFDPFMNLVLDESVE-----ECKDGQRNNVGMVVIRGNSIIMLESL 324
+ G +RGFD FMNLV+D++VE + + +R +G ++++G+++ +++++
Sbjct: 43 IEGKIRGFDEFMNLVVDDAVEVRMATKTDEEKRRPLGQILLKGDNVSLIQAV 94
>UniRef50_Q2FM21 Cluster: Like-Sm ribonucleoprotein, core; n=4;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 79
Score = 40.3 bits (90), Expect = 0.11
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +1
Query: 154 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIML 315
+ +K + GR G L D ++NL L+ES+E + +G +VIRGN+I+ +
Sbjct: 22 VEMKEDEGRTFQGRLVAVDEYLNLHLEESIETSGKNKGRELGTLVIRGNNILSI 75
>UniRef50_Q4MZX3 Cluster: Small nuclear ribonucleoprotein, putative;
n=2; Theileria|Rep: Small nuclear ribonucleoprotein,
putative - Theileria parva
Length = 91
Score = 39.9 bits (89), Expect = 0.15
Identities = 15/47 (31%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +1
Query: 184 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLES 321
+ G +RGFD +MN+VLD + E K + +VG ++++G+ + ++ +
Sbjct: 41 IEGTIRGFDEYMNMVLDNATEVHVKKNVKKDVGRILLKGDCMTLISA 87
>UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1;
Aeropyrum pernix|Rep: Putative snRNP Sm-like protein -
Aeropyrum pernix
Length = 77
Score = 39.9 bits (89), Expect = 0.15
Identities = 15/52 (28%), Positives = 35/52 (67%)
Frame = +1
Query: 160 IKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIML 315
+KL +G + GVL+ +D +N++L ++ EE + +G+ ++RG+S++++
Sbjct: 23 VKLKSGLRIKGVLKTYDQHLNIILGDA-EEIGETSIRRLGLTLVRGDSVVVI 73
>UniRef50_Q4V6D7 Cluster: IP05148p; n=2; Drosophila
melanogaster|Rep: IP05148p - Drosophila melanogaster
(Fruit fly)
Length = 99
Score = 39.5 bits (88), Expect = 0.20
Identities = 19/40 (47%), Positives = 23/40 (57%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR 267
KKL + L GR + G LR D F NLVL ++E GQR
Sbjct: 36 KKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIERIPCGQR 75
>UniRef50_Q20229 Cluster: Putative uncharacterized protein lsm-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein lsm-1 - Caenorhabditis elegans
Length = 125
Score = 39.5 bits (88), Expect = 0.20
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE-------CKDGQRNNVGMVVIRGNSI 306
KKL + L GR + G LR D F NL+L++ VE C+ GQ G ++IRG ++
Sbjct: 20 KKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ----GFMLIRGENV 75
Query: 307 IMLESLD 327
+ +D
Sbjct: 76 ELAGEID 82
>UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein,
putative; n=3; Piroplasmida|Rep: (U6) snRNA-associated
Sm-like protein, putative - Theileria annulata
Length = 90
Score = 39.1 bits (87), Expect = 0.26
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Frame = +1
Query: 151 KLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE--CKDG-QRNNVGMVVIRGNSIIML 315
K+ I + + +TG LRGFD +MN+VL++ V+ DG + + ++ GN++ ML
Sbjct: 23 KIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSADGVKTTELNDALVNGNNVAML 80
>UniRef50_Q6BPZ2 Cluster: Debaryomyces hansenii chromosome E of
strain CBS767 of Debaryomyces hansenii; n=1;
Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome E of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 78
Score = 39.1 bits (87), Expect = 0.26
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECK 255
K++ +K GR V GVL+GFD MNLVL++ E +
Sbjct: 41 KQIRVKFIGGRQVIGVLKGFDQLMNLVLEDVKENIR 76
>UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4;
Thermoplasmatales|Rep: Putative snRNP Sm-like protein -
Thermoplasma acidophilum
Length = 83
Score = 39.1 bits (87), Expect = 0.26
Identities = 16/61 (26%), Positives = 35/61 (57%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIM 312
K++ ++ + I + R +G+L G+D +MN+VL + E + V++RG+++I
Sbjct: 15 KSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGVYDRVLVRGDNVIF 74
Query: 313 L 315
+
Sbjct: 75 V 75
>UniRef50_Q01J34 Cluster: OSIGBa0140O07.9 protein; n=5; Oryza
sativa|Rep: OSIGBa0140O07.9 protein - Oryza sativa
(Rice)
Length = 136
Score = 38.7 bits (86), Expect = 0.34
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN---NVGMVVIRGNSIIMLE 318
KKL + L GR + G L FD F N+VL + E G+ +G+ VIRG +++++
Sbjct: 22 KKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGELYCDVPLGLYVIRGENVVLIG 81
Query: 319 SL 324
L
Sbjct: 82 EL 83
>UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_122_3813_3433 - Giardia lamblia ATCC
50803
Length = 126
Score = 38.7 bits (86), Expect = 0.34
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIM 312
K S ++S+ L ++TG+L FD MNL+L + EE ++VIRG+SII
Sbjct: 58 KTSLEDRVSVLLQNNSSITGLLASFDEHMNLIL-INAEETGHSLNRFFPLLVIRGDSIIF 116
Query: 313 L 315
+
Sbjct: 117 V 117
>UniRef50_A4VDT4 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 107
Score = 38.7 bits (86), Expect = 0.34
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV----GMVVIRGNSIIML 315
KK+ I G+ + G+L+G D +N +L + VE + N G+ ++RG++I +L
Sbjct: 23 KKIQIITTDGKVLIGILKGLDQALNSILSDCVERVFSSENNTKTIKHGLYLLRGDNIAVL 82
Query: 316 ESLD 327
+D
Sbjct: 83 GEVD 86
>UniRef50_Q9AVY1 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Guillardia theta|Rep: Putative small nuclear
ribonucleoprotein E - Guillardia theta (Cryptomonas phi)
Length = 78
Score = 38.3 bits (85), Expect = 0.45
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +1
Query: 190 GVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESL 324
G L GFD FMNLV++ + E+ ++G V+I+G+SI+ + S+
Sbjct: 32 GNLIGFDEFMNLVIENTTEKKDSLIVRDLGYVLIKGDSILTISSI 76
>UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 141
Score = 38.3 bits (85), Expect = 0.45
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +1
Query: 199 RGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIML 315
+GFD +MNLVLDE+ E K R ++G ++++G++I ++
Sbjct: 97 KGFDEYMNLVLDEAEEINIKKDTRKSLGRILLKGDNITLM 136
>UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_680_47464_47838 - Giardia lamblia
ATCC 50803
Length = 124
Score = 38.3 bits (85), Expect = 0.45
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDG------QRNNVGMVVIRGNSII 309
K + ++L +GR +TGVL+ +D +NLV E+ E ++ +R N ++RG+++I
Sbjct: 62 KPVLVQLRSGRFITGVLKAYDRHLNLVFSEATETWEENGIEYTEERKN---FMLRGDNVI 118
Query: 310 MLES 321
M+ S
Sbjct: 119 MVVS 122
>UniRef50_Q5K712 Cluster: U6 snRNA-associated sm-like protein lsm6,
putative; n=1; Filobasidiella neoformans|Rep: U6
snRNA-associated sm-like protein lsm6, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 88
Score = 38.3 bits (85), Expect = 0.45
Identities = 17/67 (25%), Positives = 39/67 (58%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIM 312
+N K++ +++ +G TG+L D +MN+ L+++ E + + G +RGN+++
Sbjct: 22 RNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKTAAYGDCFLRGNNVLY 81
Query: 313 LESLDRL 333
+ +L+ L
Sbjct: 82 ISALEDL 88
>UniRef50_A1CE19 Cluster: LSM domain protein; n=3;
Trichocomaceae|Rep: LSM domain protein - Aspergillus
clavatus
Length = 108
Score = 38.3 bits (85), Expect = 0.45
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +1
Query: 154 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNS 303
+++KLN+G G L+ D +MN+ L++S +E DG+ R + G IRGN+
Sbjct: 23 VTVKLNSGVVYKGELQSVDGYMNIALEQS-KEFMDGKLRRSYGDAFIRGNN 72
>UniRef50_P34659 Cluster: Probable small nuclear ribonucleoprotein
F; n=13; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein F - Caenorhabditis elegans
Length = 85
Score = 38.3 bits (85), Expect = 0.45
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 136 NSWTKKLSI-KLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIM 312
NS T K + KL G GVL D +MNL L + E + N+G ++IR N+++
Sbjct: 14 NSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNNVLY 73
Query: 313 LESLD 327
+ +D
Sbjct: 74 VGGVD 78
>UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein - Entamoeba histolytica HM-1:IMSS
Length = 89
Score = 37.9 bits (84), Expect = 0.60
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 169 NAGRAVTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESLD 327
N + G L GFD ++NLVL ++ E K R +G ++++G +I ++ ++
Sbjct: 34 NTALRIEGTLSGFDQYINLVLTDTEEVYLKTNTRRKIGTILLKGENISVISKIE 87
>UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 111
Score = 37.9 bits (84), Expect = 0.60
Identities = 16/45 (35%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +1
Query: 184 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIML 315
+ G + GFD +MNLVLD++ E K R ++G ++++G++I ++
Sbjct: 30 IEGRIIGFDEYMNLVLDDAEEINVKKDTRKSLGRILLKGDNITLM 74
>UniRef50_A6RGJ8 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 757
Score = 37.9 bits (84), Expect = 0.60
Identities = 27/97 (27%), Positives = 27/97 (27%)
Frame = +1
Query: 889 PPPXXXGXXFXGXXPXXPXXXXXXPXXXXGGXGXXXPXGXXGXPPXXGXPXXKXXXXGXX 1068
PP G G P P GG G G G PP G G
Sbjct: 351 PPGRGGGGGGGGGPPEGGGGSDGAPGRGGGGGGPPGGGGGGGGPPGGGGGGG-GGPPGGG 409
Query: 1069 XGXXPXXGXXGGXXXXPPPPXXXXXXXPXXGGGXPXG 1179
G P G GG PP P GGG G
Sbjct: 410 GGGPPGSGGGGGGGGGPPEGGGGSDGAPGRGGGGGGG 446
>UniRef50_A6R7U2 Cluster: Predicted protein; n=2;
Eurotiomycetidae|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 104
Score = 37.9 bits (84), Expect = 0.60
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 166 LNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIML 315
L + +G L GFD ++N+VL++ E G + + +++ GN+I ML
Sbjct: 43 LTSNSEFSGTLLGFDDYVNMVLEDVTEFDYTGSQTKLSKILLNGNNICML 92
>UniRef50_O29885 Cluster: SnRNP, putative; n=1; Archaeoglobus
fulgidus|Rep: SnRNP, putative - Archaeoglobus fulgidus
Length = 75
Score = 37.9 bits (84), Expect = 0.60
Identities = 16/46 (34%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +1
Query: 184 VTGVLRGFDPFMNLVLDESVEECKDGQR-NNVGMVVIRGNSIIMLE 318
+ G L G D +MNL L ++E CK ++ ++G +V+RGN++++++
Sbjct: 27 LVGKLEGVDDYMNLYLTNAME-CKGEEKVRSLGEIVLRGNNVVLIQ 71
>UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=2; Pezizomycotina|Rep: U6 snRNA-associated Sm-like
protein LSm6 - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 83
Score = 37.5 bits (83), Expect = 0.79
Identities = 15/54 (27%), Positives = 33/54 (61%)
Frame = +1
Query: 154 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIML 315
+++KLN+G G L+ D +MN+ L+++ E ++ + G +RGN+++ +
Sbjct: 26 VTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVRGNNVMYI 79
>UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=1; Schizosaccharomyces pombe|Rep: U6 snRNA-associated
Sm-like protein LSm8 - Schizosaccharomyces pombe
(Fission yeast)
Length = 94
Score = 37.5 bits (83), Expect = 0.79
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC----KDGQRNNVGMVVIRGNSIIML 315
+++ + N GR V G L+GFD NL+L +S E +D + +G+ ++RG ++ M+
Sbjct: 9 QRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRGENVAMV 68
>UniRef50_Q9Y4Y9 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=27; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm5 - Homo sapiens (Human)
Length = 91
Score = 37.5 bits (83), Expect = 0.79
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Frame = +1
Query: 151 KLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNVGMVVIRGNSIIML 315
++ I + + + + G L GFD F+N+VL++ E +G+R + +++ GN+I ML
Sbjct: 25 RIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITML 82
>UniRef50_Q3LW01 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 82
Score = 37.1 bits (82), Expect = 1.0
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Frame = +1
Query: 85 ILKSTLQCQKHIHQN*KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DESVEECK 255
++ ST+ +K+I++ N TK ++N L +D FMNLVL +E + + K
Sbjct: 1 MVNSTISLKKYINKR-INIVTKNYD-RINGRYKKFYRLLAYDKFMNLVLSDVEEYINDKK 58
Query: 256 DGQ--RNNVGMVVIRGNSIIMLES 321
D Q R +G++V+RG+ II L S
Sbjct: 59 DSQEIRRVLGLMVLRGSEIIYLFS 82
>UniRef50_A2Y859 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 141
Score = 37.1 bits (82), Expect = 1.0
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 154 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 246
+S+ N GR + G LRGFD N++LDES E
Sbjct: 16 ISVITNDGRNIVGTLRGFDQATNIILDESHE 46
>UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core,
putative; n=2; Culicidae|Rep: Small nuclear
ribonucleoprotein, core, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 162
Score = 37.1 bits (82), Expect = 1.0
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Frame = +1
Query: 154 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDG----QRNNVGMVVIRGNSIIMLES 321
+SI GR G L+GFD +N++LDES E ++ +G+ +IRG+++ ++
Sbjct: 79 VSIITADGRNFVGTLKGFDQTINIILDESHERVYSMNAGIEQVVLGLHIIRGDNVAVIGQ 138
Query: 322 LD 327
LD
Sbjct: 139 LD 140
>UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep:
AGR130Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 80
Score = 37.1 bits (82), Expect = 1.0
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Frame = +1
Query: 160 IKLNAGRAVTGVLRGFDPFMNLVLDESVE-ECKD-GQRNNVGMVVIRGNSIIML 315
+ L + R TG L GFD F+N+V+++ VE + D + + G +++ GN+I +L
Sbjct: 19 VLLTSNREFTGTLVGFDDFVNVVIEDVVEYDAPDRAVKRHPGRMLLSGNNITVL 72
>UniRef50_A3LX11 Cluster: Predicted protein; n=3;
Saccharomycetaceae|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 92
Score = 37.1 bits (82), Expect = 1.0
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 154 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD 258
L + + GR VTG+L DPF NL+L +EE +D
Sbjct: 19 LRVAIKDGRVVTGILTVIDPFGNLLLSNVIEESED 53
>UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protein -
Methanosarcina acetivorans
Length = 74
Score = 37.1 bits (82), Expect = 1.0
Identities = 16/46 (34%), Positives = 31/46 (67%)
Frame = +1
Query: 190 GVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLD 327
G L+ D +MNL L +++E + + ++G VV+RGN+II++ ++
Sbjct: 28 GTLKSVDDYMNLHLVDTMEIVRGEKVRSLGSVVLRGNNIILITPVE 73
>UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm;
n=1; Aeropyrum pernix|Rep: Putative small nucleolar RNP
protein Sm - Aeropyrum pernix
Length = 94
Score = 37.1 bits (82), Expect = 1.0
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR--NNVGMVVIRGNSI 306
K ++ +KL G G L D MNL+LD+++E +G R +G V+I+G+ +
Sbjct: 17 KEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIEVADNGTRLVAKIGRVLIKGSMV 76
>UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;
Saccharomycetaceae|Rep: Small nuclear ribonucleoprotein
E - Saccharomyces cerevisiae (Baker's yeast)
Length = 94
Score = 37.1 bits (82), Expect = 1.0
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 8/59 (13%)
Frame = +1
Query: 175 GRAVTGVLRGFDPFMNLVLDESVE---ECKDGQRN-----NVGMVVIRGNSIIMLESLD 327
G + G + GFD FMN+V+DE+VE DG+ + +G ++++G++I ++ S D
Sbjct: 36 GIRIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94
>UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Cryptosporidium parvum Iowa II|Rep: Small nuclear
ribonucleoprotein, putative - Cryptosporidium parvum
Iowa II
Length = 92
Score = 36.7 bits (81), Expect = 1.4
Identities = 18/45 (40%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Frame = +1
Query: 190 GVLRGFDPFMNLVLDESVE--ECKDGQR-NNVGMVVIRGNSIIML 315
GV++GFD +MN+VLD++ E K+ +R +VG +++RG +I ++
Sbjct: 44 GVIQGFDEYMNIVLDQASEVYTKKEVRRETSVGQLLLRGENISLI 88
>UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=5; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm5 - Saccharomyces cerevisiae (Baker's yeast)
Length = 93
Score = 36.7 bits (81), Expect = 1.4
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 8/64 (12%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE---ECKDGQRN-----NVGMVVIRGNS 303
+K+ I L + R G L GFD F+N++L+++VE + +D RN + G +++ GN+
Sbjct: 18 QKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLLSGNN 77
Query: 304 IIML 315
I +L
Sbjct: 78 IAIL 81
>UniRef50_Q2R066 Cluster: Small nuclear ribonucleoprotein F,
putative, expressed; n=5; Oryza sativa|Rep: Small
nuclear ribonucleoprotein F, putative, expressed - Oryza
sativa subsp. japonica (Rice)
Length = 86
Score = 36.3 bits (80), Expect = 1.8
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSIIMLESL 324
K + +KL G G L D +MNL L + EE DGQ N+G ++IR N+++ L +
Sbjct: 18 KPVIVKLKWGMEYKGYLVSVDSYMNLQL-ANTEEYIDGQFSGNLGEILIRCNNVLYLRGV 76
>UniRef50_Q8IU42 Cluster: Formin homology protein A; n=2;
Dictyostelium discoideum|Rep: Formin homology protein A -
Dictyostelium discoideum (Slime mold)
Length = 1218
Score = 36.3 bits (80), Expect = 1.8
Identities = 22/66 (33%), Positives = 22/66 (33%)
Frame = -1
Query: 1172 GXPPPXXGXXFXXXXGGGGXXXXPPXXPXXGXXPXXXPXXXXFXXGXPXXGGXPXXPXGX 993
G PPP GGGG PP P G P P G P P P G
Sbjct: 661 GAPPPPPPPP--PMTGGGGPPPPPPPPPMTGGGPPPPPPPPPMTGGGPPP--PPPPPGGG 716
Query: 992 XXPXPP 975
P PP
Sbjct: 717 PPPPPP 722
>UniRef50_Q4Q9J1 Cluster: Lsm7p protein, putative; n=6;
Trypanosomatidae|Rep: Lsm7p protein, putative -
Leishmania major
Length = 91
Score = 35.9 bits (79), Expect = 2.4
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +1
Query: 175 GRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLD 327
G V GVL+GFD +NLVL ++ +D +G V+RG + ++ S D
Sbjct: 32 GHEVHGVLKGFDNNVNLVLADAELWHRDTHVRKIGACVVRGGPVNLILSGD 82
>UniRef50_Q8SRW7 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN G; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN G - Encephalitozoon cuniculi
Length = 78
Score = 35.9 bits (79), Expect = 2.4
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 246
K++ +++ G + G+L G+D FMN+VL E E
Sbjct: 15 KRIVVRIGGGHTLKGLLTGYDAFMNIVLSEVTE 47
>UniRef50_Q6CGS0 Cluster: Similar to sp|P47017 Saccharomyces
cerevisiae YJL124c LSM1 Sm-like; n=1; Yarrowia
lipolytica|Rep: Similar to sp|P47017 Saccharomyces
cerevisiae YJL124c LSM1 Sm-like - Yarrowia lipolytica
(Candida lipolytica)
Length = 144
Score = 35.9 bits (79), Expect = 2.4
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE 249
+K+ + L GR G+LR FD F NLVL ++ E+
Sbjct: 26 RKVVVTLRGGRKFFGILRSFDQFANLVLQDTYEK 59
>UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1;
Filobasidiella neoformans|Rep: Sm-like protein, putative
- Cryptococcus neoformans (Filobasidiella neoformans)
Length = 95
Score = 35.9 bits (79), Expect = 2.4
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 13/74 (17%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDES------VEECKDGQ-------RNNVGMVV 288
+++ IKL R VTGVL +D MN+V+ ++ V+ ++GQ R M+
Sbjct: 22 ERVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHVVDVTEEGQPLPPRIERRTAEMLF 81
Query: 289 IRGNSIIMLESLDR 330
+RG+ +I+L ++
Sbjct: 82 VRGDGVILLSPAEQ 95
>UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1;
uncultured crenarchaeote|Rep: Putative uncharacterized
protein - uncultured crenarchaeote
Length = 89
Score = 35.9 bits (79), Expect = 2.4
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 273
K + +KL R+V G ++GFD MN+V+ E+ E + NN
Sbjct: 17 KIVLVKLKGRRSVKGKIKGFDKQMNIVITEATEVIEQQSNNN 58
>UniRef50_Q24297 Cluster: Small nuclear ribonucleoprotein F; n=7;
Fungi/Metazoa group|Rep: Small nuclear ribonucleoprotein
F - Drosophila melanogaster (Fruit fly)
Length = 88
Score = 35.9 bits (79), Expect = 2.4
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLD 327
K + +KL G+ G L D +MN+ L + E + N+G V+IR N+++ ++ ++
Sbjct: 19 KPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNNVLYIKGME 78
>UniRef50_Q9SUM2 Cluster: Probable small nuclear ribonucleoprotein
F; n=7; Magnoliophyta|Rep: Probable small nuclear
ribonucleoprotein F - Arabidopsis thaliana (Mouse-ear
cress)
Length = 88
Score = 35.9 bits (79), Expect = 2.4
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSIIMLESL 324
K + +KL G G L D +MNL L + EE DGQ N+G ++IR N+++ + +
Sbjct: 18 KTVIVKLKWGMEYKGFLASVDSYMNLQLGNT-EEYIDGQLTGNLGEILIRCNNVLYVRGV 76
>UniRef50_UPI00015B4AC1 Cluster: PREDICTED: similar to conserved
hypothetical protein; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to conserved hypothetical protein -
Nasonia vitripennis
Length = 1110
Score = 35.5 bits (78), Expect = 3.2
Identities = 36/149 (24%), Positives = 36/149 (24%), Gaps = 2/149 (1%)
Frame = +1
Query: 889 PPPXXXGXXFXGXXPXXPXXXXXXPXXXXGGXGXXXPXGXXGXPPXXGXPXXKXXXXGXX 1068
PPP G G P P G G PP G P G
Sbjct: 549 PPPHHGGPPPHGSPPHGGMSHGDYPPHR----GPPHSGSPHGGPPHGGPPHGGPPHGGPP 604
Query: 1069 XGXXPXXGXXGGXXXXPPPPXXXXXXXPXXGGGXPXGXXXXXXSP-XXPPXXXXXXXXXX 1245
G P G G PP GG P G P PP
Sbjct: 605 HGGPPHGGPPHGGPPHGGPPHGGPPHGGPPHGGPPHGGPPHGGPPHGGPPHGGPPHGGPP 664
Query: 1246 XXXPXXXGXG-GXXXPXXXXXXGGXPXGG 1329
P G G P GG P GG
Sbjct: 665 HGGPPHGGSPYGGPPPHGGPPHGGPPLGG 693
>UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep:
Sm-like protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 88
Score = 35.5 bits (78), Expect = 3.2
Identities = 16/58 (27%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Frame = +1
Query: 151 KLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNVGMVVIRGNSIIML 315
K+ + + + + G+L+GFD ++N+VL++ E +G+R + +++ GN+I +L
Sbjct: 21 KIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAIL 78
>UniRef50_Q5CQ90 Cluster: Small nuclear ribonucleoprotein U6; n=1;
Cryptosporidium parvum Iowa II|Rep: Small nuclear
ribonucleoprotein U6 - Cryptosporidium parvum Iowa II
Length = 160
Score = 35.5 bits (78), Expect = 3.2
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGNSIIMLE 318
K++ + L GR TG+ R FD + +L L+ S E + N G ++ RG+++++
Sbjct: 52 KEIYVVLRDGRQFTGIFRSFDQYGSLCLERSFEVFSNNDCYNEIYQGCMIFRGDNLMLCG 111
Query: 319 SLDR 330
+D+
Sbjct: 112 LIDQ 115
>UniRef50_Q8SQK1 Cluster: U6 snRNA-ASSOCIATED RIBONUCLEOPROTEIN;
n=1; Encephalitozoon cuniculi|Rep: U6 snRNA-ASSOCIATED
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 94
Score = 35.5 bits (78), Expect = 3.2
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNL-VLDESVEECKDGQRNNVGMVVIRGNSI 306
++S ++S+ L AG V+G L G DP++NL +LD + G +++ + IRG+SI
Sbjct: 8 RSSIGSRVSVMLKAGVYVSGRLGGIDPYLNLSLLDVRILSSHPG-LSSISVCSIRGSSI 65
>UniRef50_UPI0000499412 Cluster: U6 snRNA-associated Sm-like
protein; n=1; Entamoeba histolytica HM-1:IMSS|Rep: U6
snRNA-associated Sm-like protein - Entamoeba histolytica
HM-1:IMSS
Length = 71
Score = 35.1 bits (77), Expect = 4.2
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 303
K + + SIKLN G G + D MN+VL+ ++E + N IRGN+
Sbjct: 14 KEALFHECSIKLNDGTIFKGKMTLIDGLMNIVLENAIEYINGNKDNEYPECFIRGNN 70
>UniRef50_Q3LWL6 Cluster: MRNA splicing protein; n=1; Bigelowiella
natans|Rep: MRNA splicing protein - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 80
Score = 35.1 bits (77), Expect = 4.2
Identities = 14/43 (32%), Positives = 29/43 (67%)
Frame = +1
Query: 178 RAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSI 306
+ + G + GFD +MN+VL E+V + K+ ++ +++++GN I
Sbjct: 31 KTINGKIIGFDEYMNIVLSEAVAKNKEVEKIK-NLILVKGNQI 72
>UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Piroplasmida|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Theileria parva
Length = 94
Score = 35.1 bits (77), Expect = 4.2
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +1
Query: 175 GRAVTGVLRGFDPFMNLVLDESVEEC--KDG--QRNNVGMVVIRGNSIIMLESLD 327
GR GVL+GFD NLVL +E D + +G+ ++RG++I+++ +D
Sbjct: 20 GRVFVGVLKGFDQLTNLVLYNCLERVYHPDAPVEELELGIYLLRGDNIVLVGEVD 74
>UniRef50_A0R2X6 Cluster: Putative uncharacterized protein; n=2;
Mycobacterium|Rep: Putative uncharacterized protein -
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Length = 377
Score = 34.7 bits (76), Expect = 5.6
Identities = 24/88 (27%), Positives = 24/88 (27%), Gaps = 2/88 (2%)
Frame = +1
Query: 922 GXXPXXPXXXXXXPXXXXGGXGXXXPXGXXGXPPXXGXPXXKXXXXGXXX--GXXPXXGX 1095
G P P P GG G G PP G P G P
Sbjct: 25 GGYPPPPPPDGGYPPAQPGGFGPPPQGGYPPPPPPGGYPPPPQGGFPPPPPGGYPPPPPP 84
Query: 1096 XGGXXXXPPPPXXXXXXXPXXGGGXPXG 1179
GG PPPP P GG G
Sbjct: 85 QGGSYPPPPPPGAAGYPPPGYPGGPGAG 112
Score = 27.5 bits (58), Expect(2) = 8.3
Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Frame = -2
Query: 778 PXXPXXXPXXXXXXFXPPXLXGGXPXPPRXFXXXGPXNPP-XXGXPXP 638
P P P F PP G P PP P PP G P P
Sbjct: 56 PPPPGGYPPPPQGGFPPPPPGGYPPPPPPQGGSYPPPPPPGAAGYPPP 103
Score = 25.4 bits (53), Expect(2) = 8.3
Identities = 13/50 (26%), Positives = 15/50 (30%)
Frame = -2
Query: 1030 PXXGXXXXPPXGXXXPXPXPXXRXXXXXXXGXXXXXPKXXXPXPXGGGGF 881
P G PP P P P G P+ P P GG+
Sbjct: 13 PDGGYPPPPPPDGGYPPPPPPDGGYPPAQPGGFGPPPQGGYPPPPPPGGY 62
>UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 83
Score = 34.7 bits (76), Expect = 5.6
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRG 297
K++ I+ GR V G L FD +NLVLDE V E + +G+V+ RG
Sbjct: 18 KEVVIQFQGGRQVKGTLLSFDNQLNLVLDE-VRELP--SQRILGLVICRG 64
>UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167,
whole genome shotgun sequence; n=3;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_167, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 138
Score = 34.7 bits (76), Expect = 5.6
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Frame = +1
Query: 151 KLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC--KDG-----QRNNVGMVVIRGNSII 309
++ I L GR + G FD +N++L E E K G + +GM+++RG++II
Sbjct: 14 RVRITLGDGRMLVGTFLAFDKHLNVILSECEEYRIRKQGIHEIETKRTLGMIIVRGDNII 73
Query: 310 MLES 321
L +
Sbjct: 74 SLSA 77
>UniRef50_A3DMZ9 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Staphylothermus marinus F1|Rep: Like-Sm
ribonucleoprotein, core - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 149
Score = 34.7 bits (76), Expect = 5.6
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFD-PFMNLVLDESVEECKDGQRNNVGMVVIRGNSI 306
KK+ + L GR G+L GFD P +N++L+ +V D + N V+I+G I
Sbjct: 20 KKVKVILADGRFYEGILTGFDHPSLNILLENAV----DNKGNKYPKVIIKGERI 69
>UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putative;
n=6; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 113
Score = 34.3 bits (75), Expect = 7.4
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +1
Query: 151 KLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLDR 330
K+SI++ G G + MN++L ++ + + G+ + V +RG++I+ + D
Sbjct: 17 KVSIEVATGEVYHGTVEELQNNMNVLLKDATKTARGGKETKMDSVFVRGSNIVFFQLPDA 76
Query: 331 L 333
L
Sbjct: 77 L 77
>UniRef50_Q4PB34 Cluster: Putative uncharacterized protein; n=3;
Dikarya|Rep: Putative uncharacterized protein - Ustilago
maydis (Smut fungus)
Length = 136
Score = 34.3 bits (75), Expect = 7.4
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +1
Query: 169 NAGRAVTGVLRGFDPFMNLVL--DESVEECKDGQRNNVGMVVIRGNSII 309
N + G + GFD FMN+ L E V KD +R +G ++++G++I+
Sbjct: 32 NVDFRIEGKIIGFDEFMNVTLADAEEVWTKKDNKRVELGRILLKGDNIV 80
>UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Thermofilum pendens Hrk 5|Rep: Like-Sm
ribonucleoprotein, core - Thermofilum pendens (strain
Hrk 5)
Length = 100
Score = 34.3 bits (75), Expect = 7.4
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSII 309
+N K + +KL G G LR D MNLVLD++ E + + +G V IRG++++
Sbjct: 8 RNQSGKGVFVKLKDGSEYMGKLRMTDAAMNLVLDDAKELTETNKVVAQLGTVFIRGSNLL 67
Query: 310 ML 315
+
Sbjct: 68 FV 69
>UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=2; Saccharomyces cerevisiae|Rep: U6 snRNA-associated
Sm-like protein LSm3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 89
Score = 34.3 bits (75), Expect = 7.4
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESV--------EECKDGQRNNVGMVVIRGNS 303
+++ IKL R + G L+ FD N+VL ++V EE + +R MV IRG++
Sbjct: 14 ERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESER-RCEMVFIRGDT 72
Query: 304 IIMLES 321
+ ++ +
Sbjct: 73 VTLIST 78
>UniRef50_A7ARJ0 Cluster: Small nuclear ribonucleoprotein F,
putative; n=1; Babesia bovis|Rep: Small nuclear
ribonucleoprotein F, putative - Babesia bovis
Length = 83
Score = 33.9 bits (74), Expect = 9.8
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +1
Query: 136 NSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 303
N K + +KLN G G+L D MNL ++ + E C G IRGN+
Sbjct: 12 NITRKPVIVKLNNGTRFRGLLSSLDDRMNLAMENTKEYCDGELVKAYGDSFIRGNN 67
>UniRef50_A2EQ40 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 93
Score = 33.9 bits (74), Expect = 9.8
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 169 NAGRAVTGVLRGFDPFMNLVLDESVEEC-KDGQRNNVGMVVIRGNSIIMLESLDRL 333
N+ + G L GFD +MNLVL +S E K+ R +G ++RG + M+ + +
Sbjct: 36 NSKMYMEGNLLGFDEYMNLVLGDSYEVYPKENTRVPLGTSLLRGECVGMVHPIPNI 91
>UniRef50_A2DLB2 Cluster: Sm protein; n=2; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 76
Score = 33.9 bits (74), Expect = 9.8
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLD 327
K + L+ G + G L D NLVL ++VE + + IRGN ++ + + D
Sbjct: 17 KPTHVVLSTGSQLIGTLCTIDALFNLVLRDAVEMSNGNEVGKYQSIFIRGNQVVHVATAD 76
>UniRef50_Q0UQD0 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 187
Score = 33.9 bits (74), Expect = 9.8
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 160 IKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNVGMVVIRGNSIIMLESLDRL 333
++L +G + G+L D +MNL L E V+ DG + + + +RG++I L D +
Sbjct: 77 VELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGSTIKYLRVPDEI 135
>UniRef50_O59920 Cluster: Surface glycoprotein A; n=25;
Pneumocystis|Rep: Surface glycoprotein A - Pneumocystis
carinii
Length = 1265
Score = 33.9 bits (74), Expect = 9.8
Identities = 26/109 (23%), Positives = 27/109 (24%), Gaps = 1/109 (0%)
Frame = -1
Query: 1214 GGXXGEXXXXXXPXGXPPPXXGXXFXXXXGGGGXXXXPPXXPXXGXXPXXXPXXXXFXXG 1035
GG + P G P G PP P G P P G
Sbjct: 930 GGSKAQDGSVPKPVGPPVQPPAPAQPTPGGVPAPTLAPPAQPTSGGAPLPVPPAAPAAPG 989
Query: 1034 XPXXGGXPXXPXGXXXPXPPXXXXGXXXXXXGXXGXXP-XXXXPXXXGG 891
P G P P G P P G G P P GG
Sbjct: 990 APSTPGTPAAPAGPAAPGTPSTPSTPPAGPAGPSGGTPGAPAGPPAPGG 1038
>UniRef50_P04280 Cluster: Basic salivary proline-rich protein 1
precursor (Salivary proline-rich protein) [Contains:
Basic peptide IB-6; Peptide P-H]; n=60; Tetrapoda|Rep:
Basic salivary proline-rich protein 1 precursor (Salivary
proline-rich protein) [Contains: Basic peptide IB-6;
Peptide P-H] - Homo sapiens (Human)
Length = 392
Score = 33.9 bits (74), Expect = 9.8
Identities = 27/112 (24%), Positives = 27/112 (24%)
Frame = +1
Query: 880 KXXPPPXXXGXXFXGXXPXXPXXXXXXPXXXXGGXGXXXPXGXXGXPPXXGXPXXKXXXX 1059
K PP G G P P G P G PP
Sbjct: 96 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSQSPRSPP 155
Query: 1060 GXXXGXXPXXGXXGGXXXXPPPPXXXXXXXPXXGGGXPXGXXXXXXSPXXPP 1215
G G P G PPPP P GG P G PP
Sbjct: 156 GKPQGPPPQGG---NQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPP 204
Score = 33.9 bits (74), Expect = 9.8
Identities = 27/112 (24%), Positives = 27/112 (24%)
Frame = +1
Query: 880 KXXPPPXXXGXXFXGXXPXXPXXXXXXPXXXXGGXGXXXPXGXXGXPPXXGXPXXKXXXX 1059
K PP G G P P G P G PP
Sbjct: 157 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSQSPRSPP 216
Query: 1060 GXXXGXXPXXGXXGGXXXXPPPPXXXXXXXPXXGGGXPXGXXXXXXSPXXPP 1215
G G P G PPPP P GG P G PP
Sbjct: 217 GKPQGPPPQGG---NQPQGPPPPPGKPQGPPQQGGNRPQGPPPPGKPQGPPP 265
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 837,663,890
Number of Sequences: 1657284
Number of extensions: 13527516
Number of successful extensions: 26219
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 20590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25055
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 140513055373
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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