Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_F05
(1352 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 75 2e-14
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 50 6e-07
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 46 2e-05
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 44 5e-05
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc... 43 1e-04
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 38 0.004
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 31 0.28
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 31 0.37
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 29 1.1
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 27 7.9
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 75.4 bits (177), Expect = 2e-14
Identities = 31/62 (50%), Positives = 50/62 (80%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLD 327
+++ ++LN R V GVLRG+D F+N+VL++S+EE DG++ +G V IRGNS+IM+E+LD
Sbjct: 15 RQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSVAIRGNSVIMIETLD 74
Query: 328 RL 333
++
Sbjct: 75 KM 76
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 50.4 bits (115), Expect = 6e-07
Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 7/67 (10%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD-------GQRNNVGMVVIRGNSI 306
+++ GR +TG+L+GFD MNLVLD+ E+ ++ G +G+VV+RG ++
Sbjct: 34 QRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTL 93
Query: 307 IMLESLD 327
+++ +D
Sbjct: 94 VLIAPMD 100
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 45.6 bits (103), Expect = 2e-05
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV-GMVVIRGNSIIMLESL 324
KK+ I+L++G G+L D +MNL L E EE +G++ NV G IRGN+++ + +L
Sbjct: 15 KKVLIRLSSGVDYKGILSCLDGYMNLAL-ERTEEYVNGKKTNVYGDAFIRGNNVLYVSAL 73
Query: 325 D 327
D
Sbjct: 74 D 74
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 44.0 bits (99), Expect = 5e-05
Identities = 15/45 (33%), Positives = 33/45 (73%)
Frame = +1
Query: 190 GVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESL 324
G +RGFD FMN+VLD++V+ + +G ++++G++I +++++
Sbjct: 40 GQIRGFDEFMNIVLDDAVQVDAKNNKRELGRILLKGDNITLIQAI 84
>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 140
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC-KDGQRNNV--GMVVIRGNSIIMLE 318
+K+ + L G+ + G+LR FD F NL+L ++E D ++ G+ ++RG ++++L
Sbjct: 22 RKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGENVVLLG 81
Query: 319 SLD 327
LD
Sbjct: 82 ELD 84
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 37.5 bits (83), Expect = 0.004
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC----KDGQRNNVGMVVIRGNSIIML 315
+++ + N GR V G L+GFD NL+L +S E +D + +G+ ++RG ++ M+
Sbjct: 9 QRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRGENVAMV 68
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 31.5 bits (68), Expect = 0.28
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNVGMVVIRGNSIIMLESL 324
+ + ++L G G L D +MNL L E + DG + + IRGN+I L
Sbjct: 13 RPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQ 72
Query: 325 DRL 333
D +
Sbjct: 73 DEV 75
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 31.1 bits (67), Expect = 0.37
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Frame = +1
Query: 154 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV------------GMVVIRG 297
L++ GR G L FD FMNLVL + +E + ++ NV G+V++RG
Sbjct: 14 LNVTTKDGRTFVGQLLAFDGFMNLVLSD-CQEYRHIKKQNVPSNSVYEEKRMLGLVILRG 72
Query: 298 NSIIML 315
I+ L
Sbjct: 73 EFIVSL 78
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 154 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIML 315
L + + + R G L GFD ++N+VL + E + G +++ GN + ML
Sbjct: 19 LWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCML 73
>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 26.6 bits (56), Expect = 7.9
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 384 EAHLQHW*YFLPTPSLLK--SV*RFQHYNTV 298
++H HW Y LPT + LK SV R +Y+ V
Sbjct: 247 DSHNSHWWYNLPTEARLKGLSVGRTTNYSVV 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,652
Number of Sequences: 5004
Number of extensions: 47660
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 745191750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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