Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_F05
(1352 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 77 3e-14
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 75 1e-13
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 45 2e-04
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140... 38 0.014
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 38 0.018
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 37 0.032
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 37 0.032
02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427... 36 0.056
04_03_0736 - 19145428-19145474,19145608-19145721,19146707-191478... 33 0.52
11_06_0609 + 25444941-25444946,25445678-25445765,25446013-254460... 31 2.8
09_02_0495 + 9880714-9881196 30 3.7
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 77.0 bits (181), Expect = 3e-14
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIM 312
K KKL IKLNA R + G LRGFD FMNLV+D +V E + ++GMVV+RGNS++M
Sbjct: 11 KKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGMVVVRGNSVVM 69
Query: 313 LESLD 327
+E+L+
Sbjct: 70 IEALE 74
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 75.4 bits (177), Expect = 1e-13
Identities = 34/58 (58%), Positives = 46/58 (79%)
Frame = +1
Query: 154 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLD 327
L +KLNA R V G LRGFD FMNLV+D +V E ++N++GMVVIRGNS++M+E+L+
Sbjct: 32 LPVKLNANRVVIGTLRGFDQFMNLVVDNTV-EVNGNEKNDIGMVVIRGNSVVMIEALE 88
>08_01_0523 +
4556309-4556311,4556434-4556515,4557528-4557548,
4557824-4557895,4558259-4558311,4558721-4558807
Length = 105
Score = 44.8 bits (101), Expect = 2e-04
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 8/59 (13%)
Frame = +1
Query: 175 GRAVTGVLRGFDPFMNLVLDESVE---ECKD-----GQRNNVGMVVIRGNSIIMLESLD 327
G++VTG L+G+D +NLVLDE+VE E D G+ +G++V RG +++++ D
Sbjct: 33 GQSVTGTLKGYDQLLNLVLDEAVEFEREQDDPLKLSGKTRQLGLIVCRGTAVMLVSPTD 91
>02_01_0209 -
1399613-1399622,1399719-1399764,1399849-1399927,
1400004-1400162,1400988-1401050,1401154-1401222
Length = 141
Score = 38.3 bits (85), Expect = 0.014
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +1
Query: 199 RGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIML 315
+GFD +MNLVLDE+ E K R ++G ++++G++I ++
Sbjct: 97 KGFDEYMNLVLDEAEEINIKKDTRKSLGRILLKGDNITLM 136
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 37.9 bits (84), Expect = 0.018
Identities = 16/45 (35%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +1
Query: 184 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIML 315
+ G + GFD +MNLVLD++ E K R ++G ++++G++I ++
Sbjct: 30 IEGRIIGFDEYMNLVLDDAEEINVKKDTRKSLGRILLKGDNITLM 74
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 37.1 bits (82), Expect = 0.032
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 154 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 246
+S+ N GR + G LRGFD N++LDES E
Sbjct: 16 ISVITNDGRNIVGTLRGFDQATNIILDESHE 46
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 37.1 bits (82), Expect = 0.032
Identities = 17/64 (26%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Frame = +1
Query: 151 KLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNVGMVVIRGNSIIMLES 321
K+ + + + + G L GFD ++N+VL++ E +G+R + +++ GN+I ++ +
Sbjct: 91 KIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGNNIAIVRN 150
Query: 322 LDRL 333
LD++
Sbjct: 151 LDQI 154
>02_01_0576 -
4270808-4270871,4271548-4271612,4271717-4271754,
4272060-4272147,4272507-4272625,4273682-4273721
Length = 137
Score = 36.3 bits (80), Expect = 0.056
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSIIMLESL 324
K + +KL G G L D +MNL L + EE DGQ N+G ++IR N+++ L +
Sbjct: 69 KPVIVKLKWGMEYKGYLVSVDSYMNLQL-ANTEEYIDGQFSGNLGEILIRCNNVLYLRGV 127
>04_03_0736 -
19145428-19145474,19145608-19145721,19146707-19147870,
19150251-19150383
Length = 485
Score = 33.1 bits (72), Expect = 0.52
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 190 GVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSIIMLESLDR 330
G+L D +MN+ ++++ EE +GQ +N G IRGN+++ + + R
Sbjct: 433 GILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIRGNNVLYISTSKR 479
>11_06_0609 +
25444941-25444946,25445678-25445765,25446013-25446048,
25446069-25446106,25446219-25446283,25446622-25446685
Length = 98
Score = 30.7 bits (66), Expect = 2.8
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 190 GVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSIIMLESL 324
G L D +MNL L + EE DGQ N+G ++IR N+++ L +
Sbjct: 44 GYLVSVDSYMNLQL-ANTEEYIDGQFSGNLGEILIRCNNVLYLRGV 88
>09_02_0495 + 9880714-9881196
Length = 160
Score = 30.3 bits (65), Expect = 3.7
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +1
Query: 1090 GXXGGXXXXPPPPXXXXXXXPXXGGGXPXGXXXXXXSPXXP 1212
G GG PPP P GGG P G +P P
Sbjct: 73 GLFGGTYPPPPPGVMPGAFAPPFGGGFPYGPAPPPPNPILP 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,746,438
Number of Sequences: 37544
Number of extensions: 447172
Number of successful extensions: 724
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4260112632
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -