Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_F05
(1352 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G ... 83 3e-16
AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear... 83 3e-16
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 49 7e-06
AC025726-13|AAK73913.1| 77|Caenorhabditis elegans Lsm sm-like ... 42 0.001
Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical p... 40 0.004
Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical pr... 40 0.005
AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 39 0.009
L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear ... 38 0.012
Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 38 0.016
Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical pr... 31 1.9
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.9
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.9
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.9
U23937-1|AAA65451.1| 71|Caenorhabditis elegans small nuclear r... 29 7.5
AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical ... 29 7.5
AL117204-26|CAB55132.1| 136|Caenorhabditis elegans Hypothetical... 29 7.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 7.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 7.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 7.5
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 10.0
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 29 10.0
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 10.0
>AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G
protein.
Length = 77
Score = 83.4 bits (197), Expect = 3e-16
Identities = 36/67 (53%), Positives = 51/67 (76%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIM 312
K K++ +KLN R V+G+LRGFDPFMN+V+DE+VE KDG N+GM VIRGNS+++
Sbjct: 10 KKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGNSVVI 69
Query: 313 LESLDRL 333
+E +R+
Sbjct: 70 MEPKERI 76
Score = 34.7 bits (76), Expect = 0.15
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +3
Query: 105 MSKAHPPELKKFMDKKI 155
MSK HPPELKK+MDK++
Sbjct: 1 MSKTHPPELKKYMDKEM 17
>AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 7 protein.
Length = 77
Score = 83.4 bits (197), Expect = 3e-16
Identities = 36/67 (53%), Positives = 51/67 (76%)
Frame = +1
Query: 133 KNSWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIM 312
K K++ +KLN R V+G+LRGFDPFMN+V+DE+VE KDG N+GM VIRGNS+++
Sbjct: 10 KKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGNSVVI 69
Query: 313 LESLDRL 333
+E +R+
Sbjct: 70 MEPKERI 76
Score = 34.7 bits (76), Expect = 0.15
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +3
Query: 105 MSKAHPPELKKFMDKKI 155
MSK HPPELKK+MDK++
Sbjct: 1 MSKTHPPELKKYMDKEM 17
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 49.2 bits (112), Expect = 7e-06
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV--------GMVVIRGNS 303
K++ +K GR +GVLRGFD +N+VLD+ E +D Q +V G++V RG +
Sbjct: 22 KEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLIVARGTA 81
Query: 304 IIMLESLDRL 333
I ++ D L
Sbjct: 82 ITVVSPADGL 91
>AC025726-13|AAK73913.1| 77|Caenorhabditis elegans Lsm sm-like
protein protein 6 protein.
Length = 77
Score = 41.9 bits (94), Expect = 0.001
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSIIMLES 321
K + +KLN+G G+L D +MN+ L E EE +GQ +N G IRGN+++ + +
Sbjct: 17 KPVVVKLNSGVDYRGILACLDGYMNIAL-EQTEEYSNGQLQNKYGDAFIRGNNVLYIST 74
>Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical
protein Y49E10.15 protein.
Length = 90
Score = 39.9 bits (89), Expect = 0.004
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +1
Query: 190 GVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLES 321
G + GFD FMN+V DE+ E K RN +G ++++G++I ++ +
Sbjct: 41 GYIIGFDEFMNVVFDEAEEVNMKTKGRNKIGRILLKGDNITLIHA 85
>Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical
protein F40F8.9 protein.
Length = 125
Score = 39.5 bits (88), Expect = 0.005
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE-------CKDGQRNNVGMVVIRGNSI 306
KKL + L GR + G LR D F NL+L++ VE C+ GQ G ++IRG ++
Sbjct: 20 KKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ----GFMLIRGENV 75
Query: 307 IMLESLD 327
+ +D
Sbjct: 76 ELAGEID 82
>AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like
protein protein 8 protein.
Length = 98
Score = 38.7 bits (86), Expect = 0.009
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Frame = +1
Query: 148 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDE----SVEECKDGQRNNVGMVVIRGNSIIML 315
+ +++ GR + G+L+GFD +NLV+++ S E + +G+ +IRG ++ ++
Sbjct: 11 RMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRGENVAII 70
Query: 316 ESLD 327
+D
Sbjct: 71 GEID 74
>L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 5 protein.
Length = 85
Score = 38.3 bits (85), Expect = 0.012
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 136 NSWTKKLSI-KLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIM 312
NS T K + KL G GVL D +MNL L + E + N+G ++IR N+++
Sbjct: 14 NSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNNVLY 73
Query: 313 LESLD 327
+ +D
Sbjct: 74 VGGVD 78
>Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical
protein F28F8.3 protein.
Length = 91
Score = 37.9 bits (84), Expect = 0.016
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = +1
Query: 151 KLSIKLNAGRAVTGVLRGFDPFMNLVLDESV--EECKDGQR-NNVGMVVIRGNSIIML 315
K+ + + + + G L GFD ++N+VL++ V E DG+R + +++ GN I ML
Sbjct: 25 KIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGNHITML 82
>Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical
protein W08E3.1 protein.
Length = 160
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Frame = +1
Query: 151 KLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECK---------DGQRNNV-GMVVIRGN 300
++ I L GR G + FD MN++L E E + DG+ + G+V++RG
Sbjct: 16 RMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVLVRGE 75
Query: 301 SIIML 315
I+ +
Sbjct: 76 HIVSM 80
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.9
Identities = 24/80 (30%), Positives = 24/80 (30%)
Frame = +1
Query: 889 PPPXXXGXXFXGXXPXXPXXXXXXPXXXXGGXGXXXPXGXXGXPPXXGXPXXKXXXXGXX 1068
PPP G P P P GG P G G PP G P G
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPIT--GGPPPPPPPG--GLPPISGGPPPPPPPPGGC 768
Query: 1069 XGXXPXXGXXGGXXXXPPPP 1128
P GG PPPP
Sbjct: 769 P-PPPPPPPPGGFKGGPPPP 787
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.9
Identities = 24/80 (30%), Positives = 24/80 (30%)
Frame = +1
Query: 889 PPPXXXGXXFXGXXPXXPXXXXXXPXXXXGGXGXXXPXGXXGXPPXXGXPXXKXXXXGXX 1068
PPP G P P P GG P G G PP G P G
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPIT--GGPPPPPPPG--GLPPISGGPPPPPPPPGGC 768
Query: 1069 XGXXPXXGXXGGXXXXPPPP 1128
P GG PPPP
Sbjct: 769 P-PPPPPPPPGGFKGGPPPP 787
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.9
Identities = 24/80 (30%), Positives = 24/80 (30%)
Frame = +1
Query: 889 PPPXXXGXXFXGXXPXXPXXXXXXPXXXXGGXGXXXPXGXXGXPPXXGXPXXKXXXXGXX 1068
PPP G P P P GG P G G PP G P G
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPIT--GGPPPPPPPG--GLPPISGGPPPPPPPPGGC 351
Query: 1069 XGXXPXXGXXGGXXXXPPPP 1128
P GG PPPP
Sbjct: 352 P-PPPPPPPPGGFKGGPPPP 370
>U23937-1|AAA65451.1| 71|Caenorhabditis elegans small nuclear
ribonucleoprotein protein.
Length = 71
Score = 29.1 bits (62), Expect = 7.5
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 154 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSI 306
++++ G G L + MN L E+V +DG+ + + V IRGN I
Sbjct: 5 VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 55
>AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical
protein Y62E10A.12 protein.
Length = 102
Score = 29.1 bits (62), Expect = 7.5
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 139 SWTKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE 249
S +++ +K+ R + G LR FD +N+VL E VEE
Sbjct: 24 SLDERVYVKMRNDRELRGRLRAFDQHLNMVLSE-VEE 59
>AL117204-26|CAB55132.1| 136|Caenorhabditis elegans Hypothetical
protein Y116A8C.42 protein.
Length = 136
Score = 29.1 bits (62), Expect = 7.5
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 154 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSI 306
++++ G G L + MN L E+V +DG+ + + V IRGN I
Sbjct: 19 VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 69
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 7.5
Identities = 21/72 (29%), Positives = 21/72 (29%), Gaps = 4/72 (5%)
Frame = -1
Query: 1178 PXGXPPPXXGXXFXXXXGGGGXXXXPPXXPXXGXXPXXX----PXXXXFXXGXPXXGGXP 1011
P G PPP G G PP P G P P P GG P
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGS---PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP 289
Query: 1010 XXPXGXXXPXPP 975
P P PP
Sbjct: 290 PPPRAGSPPPPP 301
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 7.5
Identities = 21/72 (29%), Positives = 21/72 (29%), Gaps = 4/72 (5%)
Frame = -1
Query: 1178 PXGXPPPXXGXXFXXXXGGGGXXXXPPXXPXXGXXPXXX----PXXXXFXXGXPXXGGXP 1011
P G PPP G G PP P G P P P GG P
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGS---PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP 310
Query: 1010 XXPXGXXXPXPP 975
P P PP
Sbjct: 311 PPPRAGSPPPPP 322
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 7.5
Identities = 21/72 (29%), Positives = 21/72 (29%), Gaps = 4/72 (5%)
Frame = -1
Query: 1178 PXGXPPPXXGXXFXXXXGGGGXXXXPPXXPXXGXXPXXX----PXXXXFXXGXPXXGGXP 1011
P G PPP G G PP P G P P P GG P
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGS---PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP 295
Query: 1010 XXPXGXXXPXPP 975
P P PP
Sbjct: 296 PPPRAGSPPPPP 307
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 10.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 730 PPXLXGGXPXPPRXFXXXGPXNPP 659
PP + GG P PP F P PP
Sbjct: 97 PPPMMGGIPPPPPMFGAPPPPPPP 120
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.7 bits (61), Expect = 10.0
Identities = 23/73 (31%), Positives = 23/73 (31%)
Frame = +1
Query: 961 PXXXXGGXGXXXPXGXXGXPPXXGXPXXKXXXXGXXXGXXPXXGXXGGXXXXPPPPXXXX 1140
P GG P G G PP G G G P G GG PPP
Sbjct: 155 PPLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGG--QGGPPGHGGMGG-----PPPGQGG 207
Query: 1141 XXXPXXGGGXPXG 1179
P G G P G
Sbjct: 208 PGGP-GGPGGPGG 219
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.7 bits (61), Expect = 10.0
Identities = 23/73 (31%), Positives = 23/73 (31%)
Frame = +1
Query: 961 PXXXXGGXGXXXPXGXXGXPPXXGXPXXKXXXXGXXXGXXPXXGXXGGXXXXPPPPXXXX 1140
P GG P G G PP G G G P G GG PPP
Sbjct: 435 PPLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGG--QGGPPGHGGMGG-----PPPGQGG 487
Query: 1141 XXXPXXGGGXPXG 1179
P G G P G
Sbjct: 488 PGGP-GGPGGPGG 499
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,604,912
Number of Sequences: 27780
Number of extensions: 372320
Number of successful extensions: 1086
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3808844148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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