Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_F04
         (1328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    51   4e-07
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    29   1.4  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 27/74 (36%), Positives = 38/74 (51%)
 Frame = +1

Query: 58  NLRGDYHGRGVLGFSTLTLVPNQRECIDAEILTDFEISYVNAYHRRVLDTLSPILKERGL 237
           N    + GR  LG   LTL P+ ++ ID  +L+  E+ Y+N YH  V  TLSP+L     
Sbjct: 529 NTENRFAGRTYLGLKDLTLAPHCQKLIDPSLLSPEEVKYLNEYHSEVYTTLSPMLS---- 584

Query: 238 LKDLEWLEGQCIPI 279
           +   +WL     PI
Sbjct: 585 VSAKKWLSKHTSPI 598


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 109 TLVPNQRECIDAEILTDFEISYVNAYHRRVLDTLSPILKERGLLKDLEWL 258
           TL+  Q   +D  +L   E   ++    ++L  L+P   E+  LK LEWL
Sbjct: 68  TLLGEQSVQVDRVLLNRTENEKIDLECVQILRLLAPFFTEKNALKVLEWL 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,213
Number of Sequences: 5004
Number of extensions: 47710
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 729294326
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)