Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_F03
         (1320 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    23   3.8  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    22   8.9  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    22   8.9  

>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 552 LLL*PLGIVVCVILKERLLFWRSEPEAFWY 463
           LLL  + ++  + L   + +WR + E FW+
Sbjct: 102 LLLFVINVLYVLTLCYAVYYWRQQYEDFWH 131


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 56  PHRYWKLASFLLGARKLQKCLILNKLDNINWANFSLRVRPNRYSMFRTNLGTACFLT 226
           PH + K + F +  + +    I  KLD+I    + L   P  +++ R N    CF T
Sbjct: 40  PHHFTKRSFFDIQCKGVYDKSIFAKLDSICEDCYMLFREPQLHNLCRKN----CFTT 92


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 56  PHRYWKLASFLLGARKLQKCLILNKLDNINWANFSLRVRPNRYSMFRTNLGTACFLT 226
           PH + K + F +  + +    I  KLD+I    + L   P  +++ R N    CF T
Sbjct: 40  PHHFTKRSFFDIQCKGVYDKSIFAKLDSICEDCYMLFREPQLHNLCRKN----CFTT 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,955
Number of Sequences: 336
Number of extensions: 5429
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 39049180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)