Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_F03
         (1320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    48   2e-06
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   1.9  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.4  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    27   5.8  

>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 54/242 (22%), Positives = 101/242 (41%), Gaps = 25/242 (10%)
 Frame = +1

Query: 166 GKTKQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEILKSAGIKT 345
           GK + +++  + P   L +  DRI+A D +  + +  K  +  + +   F++LK   ++T
Sbjct: 18  GKVRDLYECVEFPDDLLFVATDRISAYDFIMENGIPEKGKVLTKISEFWFDVLKPH-VQT 76

Query: 346 AFV--------------KIASETAFLSKKCEMIPIEWVTRRLATGSFLK--RNPGVPEGF 477
             +              +   + + L KK +++PIE + R   TGS  K  +  G   G 
Sbjct: 77  HLITSRWEELPPVITKHEELKDRSMLVKKYKILPIEAIVRGYITGSAWKEYQKQGTVHGL 136

Query: 478 RFTPPKQETFFKDDANHDPQWSEEQIISAKFNYNGL--LIGRDEVDYMRKATILIFEILE 651
                 +E     +    P     +      + + +  ++G +    + + ++ +++I  
Sbjct: 137 NVPTGMKEAEAFPEPLFTPSTKAAEGHDENIHPDEVSKIVGPELAKQVAETSVKLYKIAR 196

Query: 652 KAWALRDCALIDMKIEFGVD-TEGSIVLAD-VIDSDSWRLWPSGDKRL-----MVDKQVY 810
                +   + D K EFGVD T   IVL D V+  DS R W + D  +       DKQ  
Sbjct: 197 DVALKKGIIIADTKFEFGVDETTNKIVLVDEVLTPDSSRFWLASDYTVGKSPDSFDKQYL 256

Query: 811 RN 816
           RN
Sbjct: 257 RN 258


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 779 SPEGHNLQESESMTSANTMLPSVSTPNSIFMSISAQS 669
           SP   +L  S S TS+     S S+P+SI  SIS+ S
Sbjct: 586 SPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSS 622


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
 Frame = -2

Query: 734 ANTMLPSVSTPNSIFMSISAQSRRAQAFSKISNIRIVAFLM*STS---SRPIRRPL*LNL 564
           A+  + +V+ P   F  I    R   A S  + I IV   + S     + PI  P  +  
Sbjct: 543 ASMWISNVAAPVLCFSIIQPLLRNLPAESDFAKILIVGIALASNVGGIASPISSPQNIVA 602

Query: 563 AEMICSSDHWGSWFASSL 510
            + +  +  WG WFA S+
Sbjct: 603 LQNMDPAAGWGEWFAVSI 620


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 794 TINLLSPEGHNLQESESMTSANTMLPSVSTPNSIFMS 684
           TI    PEG N   ++   +AN M+PS+  PNS   S
Sbjct: 550 TIANSRPEG-NSGSAKKAAAANPMIPSIVLPNSAMPS 585


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,392,725
Number of Sequences: 5004
Number of extensions: 91109
Number of successful extensions: 260
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 723332792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)