Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_F03
         (1320 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    25   4.9  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    25   6.5  

>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = +2

Query: 77  ASFLLGARKLQKCLILNKLDNINWANFSLRVRPNRYSMFRTNLGTACFLTRTESPQAMVS 256
           AS+   AR LQ+  I   L +I    F      NR  ++ TN G    +     PQ  V 
Sbjct: 562 ASWTAIARSLQRINIPKYLYDIIGNYFR-----NRVLLYETNEGNRERVVTAGVPQGSVL 616

Query: 257 KPTIW 271
            PT+W
Sbjct: 617 GPTLW 621


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 176 NRYSMFRTNLGTACFLTRTESPQAMVSKPTIW 271
           NR  M+ T  G A     +  PQ  V  PT+W
Sbjct: 585 NRVLMYDTTDGPAEIAVTSGVPQGSVLGPTLW 616


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,116,283
Number of Sequences: 2352
Number of extensions: 23681
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 152462631
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)