Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_F02
         (1343 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    57   9e-07
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ...    52   3e-05
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0...    48   4e-04
UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4...    43   0.021
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    42   0.028
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0...    41   0.084
UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2...    41   0.084
UniRef50_Q4T2T5 Cluster: Chromosome undetermined SCAF10187, whol...    35   4.2  
UniRef50_UPI0000D9A54F Cluster: PREDICTED: hypothetical protein;...    34   7.3  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 57.2 bits (132), Expect = 9e-07
 Identities = 40/116 (34%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
 Frame = +3

Query: 549 TKRPGTPKXPXXXRXSIXSAPXTNITKIDXXRQRWRXPTGX*RXQAXPPVKLPHALSCXX 728
           +K+  T       R SI SAP T+ITKID  + R        +     P++ P       
Sbjct: 2   SKKQSTGTSQRRCRFSIGSAPLTSITKIDA-QVRGGETRQDYKDTRRFPLEAPSCALLFR 60

Query: 729 PADYRIPXRLXPFXNRGTXSXLTXXVSXFG--CRSFXPNXAVCTNPPXXPIXXPYP 890
           P   R+P    PF  R     L          CRSF P+ AVCTNPP  P   PYP
Sbjct: 61  PC--RLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYP 114



 Score = 46.8 bits (106), Expect = 0.001
 Identities = 24/52 (46%), Positives = 24/52 (46%)
 Frame = +2

Query: 716 LLXXPCRLPDTXPXXSLXEPWDFXIXHXVXISXRV*VVXSKXGCVHXPPXXP 871
           LL  PCRLPDT P  SL E W F I H V IS R             PP  P
Sbjct: 57  LLFRPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSP 108


>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides capillosus ATCC 29799|Rep: Putative
           uncharacterized protein - Bacteroides capillosus ATCC
           29799
          Length = 37

 Score = 52.4 bits (120), Expect = 3e-05
 Identities = 24/36 (66%), Positives = 26/36 (72%)
 Frame = +1

Query: 709 MRSPVPTLPITGYLXXXLPSGTVGLXHXSXXXYLXS 816
           MRSPVPTLP+TGYL   LPSG+V L H S   YL S
Sbjct: 1   MRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSS 36


>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
           CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
           Citrobacter koseri ATCC BAA-895
          Length = 125

 Score = 48.4 bits (110), Expect = 4e-04
 Identities = 29/65 (44%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +3

Query: 702 LPHALSCXXPADYRIPXRLXPFXNRGTXSXLTXXVSXFG--CRSFXPNXAVCTNPPXXPI 875
           LP ALSC  PA  RIP  + PF   G+ +      S     CRSF P+ AV  NPP  P 
Sbjct: 42  LPLALSCSNPAVSRIP--VPPFSLAGSVALSHSSHSGISARCRSFAPSWAVSKNPPFSPT 99

Query: 876 XXPYP 890
             PYP
Sbjct: 100 AAPYP 104


>UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4;
           Bacteria|Rep: Putative uncharacterized protein 1 -
           Escherichia coli
          Length = 42

 Score = 42.7 bits (96), Expect = 0.021
 Identities = 18/25 (72%), Positives = 18/25 (72%)
 Frame = -1

Query: 890 RIRRXDRXXRGVXAHSPVWXERPTP 816
           RIRR  R  RGV AHSP W ERPTP
Sbjct: 17  RIRRSGRAERGVRAHSPAWSERPTP 41


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 42.3 bits (95), Expect = 0.028
 Identities = 18/24 (75%), Positives = 18/24 (75%)
 Frame = +1

Query: 358 ALXNLPTRGERRXGYWAHFRFLPH 429
           AL N PTRGERR  YWA FRFL H
Sbjct: 26  ALMNRPTRGERRFAYWALFRFLAH 49


>UniRef50_UPI00015C640B Cluster: hypothetical protein
           CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
           Citrobacter koseri ATCC BAA-895
          Length = 99

 Score = 40.7 bits (91), Expect = 0.084
 Identities = 30/82 (36%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = -1

Query: 881 RXDRXXRGVXAHSPVWXERPTPEXRYXXXEX*XSPTVPEGXKXXRYPVIG-RVGTGERMR 705
           R  R  RGV A+SP W ERP P           +P  P+G K  +  V G R G   R  
Sbjct: 20  RSSRAERGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQ--VSGKRQGRNRRAH 77

Query: 704 ELNRGXRL-XSLXSCRXSPPLT 642
           E   G +   SL      PPLT
Sbjct: 78  EGAAGEKSPASLSPVGFRPPLT 99


>UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2;
           cellular organisms|Rep: Putative uncharacterized protein
           1 - Escherichia coli
          Length = 47

 Score = 40.7 bits (91), Expect = 0.084
 Identities = 17/25 (68%), Positives = 18/25 (72%)
 Frame = -1

Query: 890 RIRRXDRXXRGVXAHSPVWXERPTP 816
           RIRR  R  RGV A+SP W ERPTP
Sbjct: 17  RIRRSSRAERGVLAYSPAWSERPTP 41


>UniRef50_Q4T2T5 Cluster: Chromosome undetermined SCAF10187, whole
           genome shotgun sequence; n=3; Fungi/Metazoa group|Rep:
           Chromosome undetermined SCAF10187, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 743

 Score = 35.1 bits (77), Expect = 4.2
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +1

Query: 607 PPXQTSQKSTLXVRGGEXRQDXKDXKRXPLLSSLMRSPVPTLPITGYLXXXLPSGTVG 780
           PP  T++++T  +R     Q         LLSS + S VPTL + G+L   L  G +G
Sbjct: 153 PPWSTARRATGGLRTCSESQPQSSCSPPCLLSSFLLSMVPTLLLLGFLLFTLRRGPMG 210


>UniRef50_UPI0000D9A54F Cluster: PREDICTED: hypothetical protein;
           n=1; Macaca mulatta|Rep: PREDICTED: hypothetical protein
           - Macaca mulatta
          Length = 627

 Score = 34.3 bits (75), Expect = 7.3
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -2

Query: 466 RSQHXNDRVQGVSEGGSGSAP----NTXXASPRELVDSLMXAKPPXXPPEPXT 320
           R +  ND+VQ     G    P    +T   SPR LV  L    PP  PP+P T
Sbjct: 19  RERFANDKVQSFGSRGQPPPPPHRHDTRALSPRALVAFLPALTPPQLPPKPLT 71


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,061,600
Number of Sequences: 1657284
Number of extensions: 7660389
Number of successful extensions: 11837
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11815
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 139298245096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)