Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_E23
(1234 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 36 0.012
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 35 0.020
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 34 0.047
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 34 0.047
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 31 0.25
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 30 0.57
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 30 0.57
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 30 0.57
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.76
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 1.3
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 29 1.3
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 29 1.8
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb... 28 2.3
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 28 3.1
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 28 3.1
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 27 4.0
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 27 4.0
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 7.1
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 7.1
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 26 9.3
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 26 9.3
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 26 9.3
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 9.3
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation... 26 9.3
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 9.3
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 35.9 bits (79), Expect = 0.012
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Frame = +3
Query: 204 IEHHTKEFHKTLEQQFNSLTKSKDAQDF---SKAWKDGSESVLQQLNAFAKSLQGALGDA 374
I+ K LEQ+ +L ++++A++ ++ + D S S +L A AK A DA
Sbjct: 98 IQPDEKTLQDLLEQRQVALREAREAEEELQRARQYNDRSTSEALELEARAKK---AAQDA 154
Query: 375 NGKAKEALEQSRQNIERTAEELRK-AHPDVEKNATALRE 488
A E +++ +IER+A K A + E+ ATALRE
Sbjct: 155 E-LASERAREAQSSIERSASLREKQAREEAERAATALRE 192
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 35.1 bits (77), Expect = 0.020
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Frame = +3
Query: 234 TLEQQFNSLTKSKDAQD---FSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQ 404
T+E ++SL KSK + F + ++ + +L N + + L + +A KA+++LEQ
Sbjct: 8 TIELDYDSL-KSKISNFNSIFDRFLQEERKKLLNNKNEYLRQLS-EINEAQKKAEKSLEQ 65
Query: 405 SRQNIERTAEELRKAHPD---VEKNATALREKLQAAVQNTVQESQKL 536
+ + E L K H + E+ + +EKL A ++ + S++L
Sbjct: 66 TEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEEL 112
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 33.9 bits (74), Expect = 0.047
Identities = 32/125 (25%), Positives = 57/125 (45%)
Frame = +3
Query: 279 QDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPD 458
++++ WK +SVL N + + L + K EALE+ +Q +E +E K
Sbjct: 1329 KEYNSRWKLRFQSVL---NKYERVDPTQLEELK-KNCEALEKEKQELETKLQETAKETDT 1384
Query: 459 VEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVI 638
++ +L E+ V+N +E ++ K + NEK K++ FA QE+
Sbjct: 1385 FKQQVNSLNEE----VENLKKEVEQANTKNTRLAAAWNEKCENLKKSSLTRFAHLKQELT 1440
Query: 639 KKIQE 653
K +E
Sbjct: 1441 NKNKE 1445
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 33.9 bits (74), Expect = 0.047
Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 9/165 (5%)
Frame = +3
Query: 228 HKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANG---KAKEAL 398
H+T+ +Q + +A + ES L N ++ L ++N K +E +
Sbjct: 625 HQTITKQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRTKLLKLEESNKSLIKKQEDV 684
Query: 399 EQSRQNIERTAEELRKAHPDV---EKNATALREKLQ--AAVQNTVQESQKLAKKVSSNVQ 563
+ +NI+ E+LRK+ + + A LRE + T++ + S+ +
Sbjct: 685 DSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHETLEAQRNDLHSSLSDAK 744
Query: 564 ETNEKLAPKIKAAYDDFAKNTQEVIKKIQEAANAKQ-*ASILNSH 695
TN L+ ++ + +D + T V Q++ KQ S++NS+
Sbjct: 745 NTNAILSSELTKSSEDVKRLTANVETLTQDSKAMKQSFTSLVNSY 789
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 31.5 bits (68), Expect = 0.25
Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 3/161 (1%)
Frame = +3
Query: 174 RRDAXDFFKDIEHHTKEFHKTLEQQFNSLT---KSKDAQDFSKAWKDGSESVLQQLNAFA 344
++ DFFK + ++ H TL ++ NSL+ +K + G + +LN
Sbjct: 56 KKSEQDFFKMLSSRDRDAHSTLRKRSNSLSSFLSTKSTSASENKFHGGLNWLSLKLNLLL 115
Query: 345 KSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQE 524
+ LQG + A S + E V +N + R+ L V ++Q
Sbjct: 116 R-LQGRMNSAR------TNTSMNPYSCDSNENLSTLSSVNQNFNS-RQLLATIVPESIQN 167
Query: 525 SQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKI 647
L + V++ L P + Y KNT + KK+
Sbjct: 168 GCSLLRITKKKVRQRKVSLDP--ISGYLMLDKNTGKAYKKL 206
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 30.3 bits (65), Expect = 0.57
Identities = 26/109 (23%), Positives = 47/109 (43%)
Frame = +3
Query: 153 LAQGAMVRRDAXDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQL 332
L + V R F + +EH+ K+LE+Q + L +SKDA A S+
Sbjct: 193 LKKSKSVPRLRGQFMEPVEHN-HPLSKSLEEQSSFLEQSKDASSNLTACNRSGSSLSSNF 251
Query: 333 NAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATA 479
+ S + +L N K++ +L+ ++ R P+V + +A
Sbjct: 252 YSSRLSKKTSLASLN-KSRASLQHKIMSLSRNIIRRVFHKPEVHLDPSA 299
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 30.3 bits (65), Expect = 0.57
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Frame = +3
Query: 381 KAKEALE---QSRQNIERTAEELRKAHPDVEKNATALREKLQAAV-----QNTVQESQKL 536
K KE +E Q ++ +ER E LRK D K+ + +AA+ + + E QKL
Sbjct: 128 KEKEEMEGSLQGKEKLEREVENLRK-ELDKYKDLVETEAEKRAAITKEECEKSWLEQQKL 186
Query: 537 AKKVSSNVQETNEKLAPKIK 596
K + T +KL KI+
Sbjct: 187 YKDMEQENASTIQKLTSKIR 206
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 30.3 bits (65), Expect = 0.57
Identities = 17/81 (20%), Positives = 38/81 (46%)
Frame = +3
Query: 333 NAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQN 512
N + ++ AL + KA + LE+ ++ E + EE+ H + T+ + + +
Sbjct: 337 NLVSLAIYEALYEKFLKACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEK 396
Query: 513 TVQESQKLAKKVSSNVQETNE 575
+QE ++ K + Q+ +E
Sbjct: 397 IIQEKSRVDKMIDEYRQKLSE 417
>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 168
Score = 29.9 bits (64), Expect = 0.76
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 300 KDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEE 437
KDG+++ +LN FAK L + + +A + + IE+++ E
Sbjct: 111 KDGTDAFANELNLFAKKLGFSKNSFDARALDTESEDETEIEKSSSE 156
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/88 (23%), Positives = 46/88 (52%)
Frame = +3
Query: 396 LEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNE 575
++ Q+IE T L K D+E++ +++ + V + Q+ ++++ +Q+T E
Sbjct: 496 MKTQEQSIELT--RLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKE 553
Query: 576 KLAPKIKAAYDDFAKNTQEVIKKIQEAA 659
L+ K + DD+ +EV+ K++ A
Sbjct: 554 VLSKSSKES-DDY----EEVVGKLRTEA 576
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/69 (24%), Positives = 38/69 (55%)
Frame = +3
Query: 381 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 560
K+++ LE S Q +E E + P+V++ +EK ++ V+ +E +K+S N+
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKE-----EKISRNL 185
Query: 561 QETNEKLAP 587
+ ++ ++P
Sbjct: 186 RSSSRSISP 194
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 279 QDFSKAWKDGSESVLQQLNAFAKSLQGALGD-ANGKAKEALEQSR-QNIERTAE 434
+D + A+ + SVLQ+L+ + +QG LG N AL Q + QN++ E
Sbjct: 79 EDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALRQDKGQNLQHLQE 132
>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 28.3 bits (60), Expect = 2.3
Identities = 24/88 (27%), Positives = 45/88 (51%)
Frame = +3
Query: 204 IEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGK 383
IE K F K ++ NS K+ +A F +G++ ++ + A ++L L +
Sbjct: 73 IESSMKSF-KPVKIDLNSQLKAINA--FEAKASEGAKKNVELVKAELQNLSATLKN---- 125
Query: 384 AKEALEQSRQNIERTAEELRKAHPDVEK 467
+EQ+R E T E++++A P++EK
Sbjct: 126 ----IEQARPTEEITIEDMKQAVPEIEK 149
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 27 NSLRFPTLLLMLQFRVRISSAL--XSLGQYIMAAKFV 131
N LRFP+ L+ F V +SAL LGQY+ ++ V
Sbjct: 101 NCLRFPSFLINFIFSVYQTSALGFLCLGQYLRSSAMV 137
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 27.9 bits (59), Expect = 3.1
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +3
Query: 234 TLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGA------LGDANGKAKEA 395
T++ + SL K D + ++ ES L L L A L D+ KAK
Sbjct: 354 TIQIELESLRKETDTTSVER--REKLESKLTDLKEEQDKLSAAWEEERKLLDSIKKAKTE 411
Query: 396 LEQSRQNIERTAEE 437
LEQ+R +ERT E
Sbjct: 412 LEQARIELERTQRE 425
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 411 ASTVPKPPWPCRSRLRALPG 352
AST+ K PWP + L +PG
Sbjct: 38 ASTLEKEPWPASTALLVMPG 57
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 27.5 bits (58), Expect = 4.0
Identities = 27/108 (25%), Positives = 48/108 (44%)
Frame = +3
Query: 309 SESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALRE 488
S + + A K L GA KAKE ++ R +RTA E+RK +E+ R
Sbjct: 143 SRRISGMILAHFKRLSGA---DEKKAKEEDKRIRLLAKRTAWEIRKKWKVIEREVRRRRA 199
Query: 489 KLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQE 632
+ A Q + Q +++ ++ + + L +I+ A + + T E
Sbjct: 200 ERAAEAQRVAGKEQ-----LANILKHSTDLLEARIERANINISAQTSE 242
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +3
Query: 180 DAXDFFKDIEHHTKEFHKTLEQ--QFNSLTKSKDAQDFSKAW 299
D +F D++ H K FH E+ + + +K D K W
Sbjct: 665 DMKSYFSDLDRHMKYFHAMQEKDAELIEMAFAKKKADVRKEW 706
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 7.1
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 348 SLQGALGDANGKAKEALEQSRQNIE-----RTAEELRKAHPDVEKNATALREKLQAA 503
S++ L + N + KE +E + RT +E EKN LRE+L+ A
Sbjct: 520 SMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEFETLKTQYEKNLCNLREQLKTA 576
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 9.3
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +3
Query: 411 QNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPK 590
+NI + E+ R + NA+ + K Q + T++ Q+LAK + +++ E+L+
Sbjct: 136 KNILKAIEDSRYPFVANKLNASTIEVKPQ---RTTLESRQQLAKVLEGYAKDSREQLSAM 192
Query: 591 IKAAYDDFAKN 623
+ AKN
Sbjct: 193 RTELKKEIAKN 203
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/86 (15%), Positives = 41/86 (47%)
Frame = +3
Query: 387 KEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQE 566
K ++R+N++ + + P+++ + + +L+ +++++ Q + + V+E
Sbjct: 81 KRRNRKARENLKVNVSSIGEVLPEIDLDISVANSRLKPVIKDSLSSKQTKSSMKRNTVEE 140
Query: 567 TNEKLAPKIKAAYDDFAKNTQEVIKK 644
E+ +K + F N E +++
Sbjct: 141 I-ERFQAILK--HPSFVSNPLETVRE 163
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 26.2 bits (55), Expect = 9.3
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = -3
Query: 377 VRVSERSLETLGEGVELLQHGL----GAVLPSLAEVLCVL*LGERVKLLF*SLMELLGVV 210
++ +R L +G E+L GL G +LP + E++ +L VK+LF + +GV
Sbjct: 595 LKKEDRLLPQIGRMREMLSRGLAVHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVN 654
Query: 209 FDVLEEVXSVASHH 168
V S H
Sbjct: 655 MPAKSVVFSGTQKH 668
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 9.3
Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 1/148 (0%)
Frame = +3
Query: 204 IEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGK 383
I + KE TL +Q +L ++ K +ES+L + N + L +
Sbjct: 574 ISNAVKENSNTLSEQIKNLESELNSS------KIKNESLLNERNLLKEMLATSRSSILSH 627
Query: 384 AKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQ 563
S NI+ + + ++ ++EKN R ++ A ++ + +Q L ++ + +
Sbjct: 628 -----NSSAGNIDDKMKSIDESTRELEKNYEVYRNEMTAIQESLSKRNQDLLSEMEAIRK 682
Query: 564 E-TNEKLAPKIKAAYDDFAKNTQEVIKK 644
E N K ++ A N E KK
Sbjct: 683 ELENSKYQQQLSTDRLTNANNDVEAFKK 710
>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 321
Score = 26.2 bits (55), Expect = 9.3
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 216 TKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQ-GALGDA 374
+K+ + E+Q +T DFS K + L+AF K L+ + GDA
Sbjct: 89 SKKSSASAEEQTEDITTESGELDFSSMKKKKKKKKSADLSAFEKELEASSTGDA 142
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 74 SHLLRTQXSRTVHHGRQVRSSLRLHRSGPRSDGATR 181
S + + SRT+HHG +V+ ++ ++ G S ++R
Sbjct: 121 SKIRNSLYSRTIHHGNRVQKKIK-NKHGKNSSKSSR 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,903
Number of Sequences: 5004
Number of extensions: 39688
Number of successful extensions: 362
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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