Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_E22
(1278 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p pro... 158 1e-38
AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA... 158 1e-38
U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein ... 152 1e-36
AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p pro... 60 5e-09
AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding ... 60 5e-09
AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA... 60 5e-09
BT014638-1|AAT27262.1| 433|Drosophila melanogaster RH44447p pro... 31 4.5
AY070492-1|AAL47963.1| 121|Drosophila melanogaster GH01562p pro... 31 4.5
AE014297-1396|AAS65140.1| 121|Drosophila melanogaster CG6959-PB... 31 4.5
AE014297-1395|AAF54710.1| 425|Drosophila melanogaster CG6959-PA... 31 4.5
AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p pro... 30 7.8
AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB... 30 7.8
AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA... 30 7.8
>AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p
protein.
Length = 352
Score = 158 bits (384), Expect = 1e-38
Identities = 74/93 (79%), Positives = 80/93 (86%)
Frame = +2
Query: 239 VIAEXVSGTVKWFNVKRGYGFINRNDTKEXVFVHQXAIARNNPRKAVRSVGDGEAVEFAV 418
VIA V+GTVKWFNVK GYGFINRNDT+E VFVHQ AIARNNP+KAVRSVGDGE VEF V
Sbjct: 57 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116
Query: 419 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGY 517
V GEKG EAA VTGP GEPV+GS +AADKRR +
Sbjct: 117 VIGEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149
>AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA
protein.
Length = 352
Score = 158 bits (384), Expect = 1e-38
Identities = 74/93 (79%), Positives = 80/93 (86%)
Frame = +2
Query: 239 VIAEXVSGTVKWFNVKRGYGFINRNDTKEXVFVHQXAIARNNPRKAVRSVGDGEAVEFAV 418
VIA V+GTVKWFNVK GYGFINRNDT+E VFVHQ AIARNNP+KAVRSVGDGE VEF V
Sbjct: 57 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116
Query: 419 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGY 517
V GEKG EAA VTGP GEPV+GS +AADKRR +
Sbjct: 117 VIGEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149
>U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein
protein.
Length = 359
Score = 152 bits (368), Expect = 1e-36
Identities = 73/93 (78%), Positives = 79/93 (84%)
Frame = +2
Query: 239 VIAEXVSGTVKWFNVKRGYGFINRNDTKEXVFVHQXAIARNNPRKAVRSVGDGEAVEFAV 418
VIA V+GTVKWFNVK GYGFINRNDT+E VFVHQ AIA NNP+KAVRSVGDGE VEF V
Sbjct: 58 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIA-NNPKKAVRSVGDGEVVEFDV 116
Query: 419 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGY 517
V GEKG EAA VTGP GEPV+GS +AADKRR +
Sbjct: 117 VIGEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149
>AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p
protein.
Length = 195
Score = 60.5 bits (140), Expect = 5e-09
Identities = 32/78 (41%), Positives = 42/78 (53%)
Frame = +2
Query: 260 GTVKWFNVKRGYGFINRNDTKEXVFVHQXAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 439
G KWFNV +G+GF+ ND + VFVHQ I + RS+G+ E VEF +G
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96
Query: 440 EAAGVTGPGGEPVKGSPY 493
EA V+ G +GS Y
Sbjct: 97 EATRVSSRHGGSCQGSTY 114
>AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding
protein LIN-28 protein.
Length = 195
Score = 60.5 bits (140), Expect = 5e-09
Identities = 32/78 (41%), Positives = 42/78 (53%)
Frame = +2
Query: 260 GTVKWFNVKRGYGFINRNDTKEXVFVHQXAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 439
G KWFNV +G+GF+ ND + VFVHQ I + RS+G+ E VEF +G
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96
Query: 440 EAAGVTGPGGEPVKGSPY 493
EA V+ G +GS Y
Sbjct: 97 EATRVSSRHGGSCQGSTY 114
>AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA
protein.
Length = 195
Score = 60.5 bits (140), Expect = 5e-09
Identities = 32/78 (41%), Positives = 42/78 (53%)
Frame = +2
Query: 260 GTVKWFNVKRGYGFINRNDTKEXVFVHQXAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 439
G KWFNV +G+GF+ ND + VFVHQ I + RS+G+ E VEF +G
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96
Query: 440 EAAGVTGPGGEPVKGSPY 493
EA V+ G +GS Y
Sbjct: 97 EATRVSSRHGGSCQGSTY 114
>BT014638-1|AAT27262.1| 433|Drosophila melanogaster RH44447p
protein.
Length = 433
Score = 30.7 bits (66), Expect = 4.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 809 GHFGAEPDFVLPAPAGNCADAL-GGTLLYSLGQDLPH 702
GH AEP +L G CADA+ + + +D PH
Sbjct: 319 GHVDAEPAHLLQMDMGQCADAIAAAATILNTAEDEPH 355
>AY070492-1|AAL47963.1| 121|Drosophila melanogaster GH01562p
protein.
Length = 121
Score = 30.7 bits (66), Expect = 4.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 809 GHFGAEPDFVLPAPAGNCADAL-GGTLLYSLGQDLPH 702
GH AEP +L G CADA+ + + +D PH
Sbjct: 7 GHVDAEPAHLLQMDMGQCADAIAAAATILNTAEDEPH 43
>AE014297-1396|AAS65140.1| 121|Drosophila melanogaster CG6959-PB,
isoform B protein.
Length = 121
Score = 30.7 bits (66), Expect = 4.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 809 GHFGAEPDFVLPAPAGNCADAL-GGTLLYSLGQDLPH 702
GH AEP +L G CADA+ + + +D PH
Sbjct: 7 GHVDAEPAHLLQMDMGQCADAIAAAATILNTAEDEPH 43
>AE014297-1395|AAF54710.1| 425|Drosophila melanogaster CG6959-PA,
isoform A protein.
Length = 425
Score = 30.7 bits (66), Expect = 4.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 809 GHFGAEPDFVLPAPAGNCADAL-GGTLLYSLGQDLPH 702
GH AEP +L G CADA+ + + +D PH
Sbjct: 311 GHVDAEPAHLLQMDMGQCADAIAAAATILNTAEDEPH 347
>AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p
protein.
Length = 143
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 254 VSGTVKWFNVKRGYGFINRNDTKEXVFVH 340
V+G VK F+ +G+GFI N E VF H
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCH 83
>AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB,
isoform B protein.
Length = 143
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 254 VSGTVKWFNVKRGYGFINRNDTKEXVFVH 340
V+G VK F+ +G+GFI N E VF H
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCH 83
>AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA,
isoform A protein.
Length = 143
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 254 VSGTVKWFNVKRGYGFINRNDTKEXVFVH 340
V+G VK F+ +G+GFI N E VF H
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCH 83
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,757,640
Number of Sequences: 53049
Number of extensions: 693989
Number of successful extensions: 2138
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2137
length of database: 24,988,368
effective HSP length: 87
effective length of database: 20,373,105
effective search space used: 6886109490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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