Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_E22
(1278 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 127 2e-29
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 86 4e-17
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 82 7e-16
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 79 9e-15
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 79 9e-15
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 53 5e-07
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 53 5e-07
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 53 5e-07
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 53 5e-07
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 127 bits (306), Expect = 2e-29
Identities = 59/89 (66%), Positives = 65/89 (73%)
Frame = +2
Query: 239 VIAEXVSGTVKWFNVKRGYGFINRNDTKEXVFVHQXAIARNNPRKAVRSVGDGEAVEFAV 418
V A V GTVKWFNVK GYGFINR DT E +FVHQ AI NNP K +RS+GD E V F +
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75
Query: 419 VAGEKGFEAAGVTGPGGEPVKGSPYAADK 505
V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 76 VEGSKGLEAASVTGPDGGPVQGSKYAADR 104
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 86.2 bits (204), Expect = 4e-17
Identities = 43/85 (50%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +2
Query: 242 IAEXVSGTVKWFNVKRGYGFINRNDTKEXVFVHQXAIARNNPRK-AVRSVGDGEAVEFAV 418
I + G VKW++V R YGFI+RND ++ +FVHQ AIA++ K +R++GD E V F +
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121
Query: 419 VAGEKGFEAAGVTGPGGEPVKGSPY 493
V G+ G EAA VTGP G+ V GS Y
Sbjct: 122 VEGKNGPEAANVTGPNGDNVIGSRY 146
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 82.2 bits (194), Expect = 7e-16
Identities = 41/86 (47%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Frame = +2
Query: 239 VIAEXVSGTVKWFNVKRGYGFINRNDTKEXVFVHQXAIARNNPRK-AVRSVGDGEAVEFA 415
V+ + G VKW++V R YGFI+R+D ++ VFVHQ AI++++ K +R++ D E V F
Sbjct: 59 VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFD 118
Query: 416 VVAGEKGFEAAGVTGPGGEPVKGSPY 493
+V G+ G EAA VTGP G V GS Y
Sbjct: 119 LVDGKNGPEAANVTGPAGVNVSGSKY 144
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 78.6 bits (185), Expect = 9e-15
Identities = 44/90 (48%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Frame = +2
Query: 239 VIAEXVSGTVKWFNVKRGYGFINRN---DTKEXVFVHQXAIARNNPRKA-VRSVGDGEAV 406
VI V G VKWF+V+ YGF+ R+ D E FVHQ AI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 407 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 496
F +V G KG EAA VTGP GE V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 78.6 bits (185), Expect = 9e-15
Identities = 44/90 (48%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Frame = +2
Query: 239 VIAEXVSGTVKWFNVKRGYGFINRN---DTKEXVFVHQXAIARNNPRKA-VRSVGDGEAV 406
VI V G VKWF+V+ YGF+ R+ D E FVHQ AI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 407 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 496
F +V G KG EAA VTGP GE V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 52.8 bits (121), Expect = 5e-07
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = +2
Query: 260 GTVKWFNVKRGYGFINRNDTKEXVFVHQXAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 433
G+ KWFNV +GYGF+ + T E +FVHQ N + RS+ +GE V + + + K
Sbjct: 24 GSCKWFNVSKGYGFVIDDITGEDLFVHQ----SNLNMQGFRSLDEGERVSYYIQERSNGK 79
Query: 434 GFEAAGVTGP-GGEPVKGS 487
G EA V+G G+ +KGS
Sbjct: 80 GREAYAVSGEVEGQGLKGS 98
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 52.8 bits (121), Expect = 5e-07
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = +2
Query: 260 GTVKWFNVKRGYGFINRNDTKEXVFVHQXAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 433
G+ KWFNV +GYGF+ + T E +FVHQ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQ----SNLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 434 GFEAAGVTGP-GGEPVKGS 487
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 52.8 bits (121), Expect = 5e-07
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = +2
Query: 260 GTVKWFNVKRGYGFINRNDTKEXVFVHQXAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 433
G+ KWFNV +GYGF+ + T E +FVHQ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQ----SNLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 434 GFEAAGVTGP-GGEPVKGS 487
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 52.8 bits (121), Expect = 5e-07
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = +2
Query: 260 GTVKWFNVKRGYGFINRNDTKEXVFVHQXAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 433
G+ KWFNV +GYGF+ + T E +FVHQ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQ----SNLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 434 GFEAAGVTGP-GGEPVKGS 487
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,955,840
Number of Sequences: 27780
Number of extensions: 327804
Number of successful extensions: 943
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3568584636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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