Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E16
         (1379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    31   0.28 
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    31   0.28 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.86 
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    29   2.0  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   6.1  
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...    27   8.1  
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...    27   8.1  

>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 806  RTFGDAIIHVSHIDYAVEDNAPLPEHGVGKAASAEETEIGRLXGENLVEDGA-TLXMGIG 982
            + FG+ I  +  ++   +DN P  E  V      ++ + G+L  + + E+ A  +  G+G
Sbjct: 82   KEFGNNINEMDDMEDVSDDNLPEEEQAVNYTGDKDDEDFGKLLAKEMGEEAAGQVLSGVG 141

Query: 983  -SIPDAVL 1003
             SIP  ++
Sbjct: 142  FSIPSGLV 149


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 260 LSSRNEDSRLEEQFSQSQTSCYLNLVSYKAKGC 162
           L SRN ++ +EE FS+ + S  L L+S+  K C
Sbjct: 758 LKSRNGNNSVEEGFSEEERSILLKLLSWNVKFC 790


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 800

 Score = 29.9 bits (64), Expect = 0.86
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 1002 STASGMLPIPXCSVAPSSTRFSPISRPISVSSALAAFPTPCSGRGALSS 856
            ST+S  +PIP  S + + T  SP+  P + +S   +   P  G  +LS+
Sbjct: 199  STSSTSIPIPPTSTSSTDTNSSPL--PTTSTSCTTSTSIPTGGSSSLST 245


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 254 SRNEDSRLEEQFSQSQTSCYLNLVSYKAKGCRYYYFI 144
           S NE + +     +    C LNL S K  GCR +Y I
Sbjct: 364 SGNELTEIPYALGELPQLCSLNLASNKITGCRTFYHI 400


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 755  ALVNSKIIIAQVNVNMPRTFGDAIIHV 835
            +++N    IAQV +++PRT GD I+ V
Sbjct: 1228 SIINKIRKIAQVKIDVPRTPGDEIVVV 1254


>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -2

Query: 448 HGIEKRHRRG-GRALGEHGQSGFKTFLKRLLCGRIFRLPVQGLRQR 314
           +GI  R R    R   EHGQ    T+LK    G I  + V G  Q+
Sbjct: 5   YGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQK 50


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -2

Query: 448 HGIEKRHRRG-GRALGEHGQSGFKTFLKRLLCGRIFRLPVQGLRQR 314
           +GI  R R    R   EHGQ    T+LK    G I  + V G  Q+
Sbjct: 5   YGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQK 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,188,918
Number of Sequences: 5004
Number of extensions: 78646
Number of successful extensions: 237
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 763076352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)