Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E16
         (1379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical pr...   206   4e-53
Z46934-7|CAA87047.1|  472|Caenorhabditis elegans Hypothetical pr...   153   4e-37
AL032632-12|CAA21589.3|  333|Caenorhabditis elegans Hypothetical...    87   3e-17
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    29   7.7  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    29   7.7  

>U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical protein
            C44B7.10 protein.
          Length = 471

 Score =  206 bits (502), Expect = 4e-53
 Identities = 109/230 (47%), Positives = 147/230 (63%), Gaps = 2/230 (0%)
 Frame = +2

Query: 335  RKPEYSTAKEAFEKCLKSGLTVFAQGAAATPVPLLNAMTEVGKSGSLRDIKVVHMHTEKD 514
            + P+  +  EA  + +KSG  VF  G AATP PLL +++E   + +L  IK+ H+H E  
Sbjct: 36   KSPKVVSLAEA-TRDIKSGDNVFVHGIAATPTPLLQSLSEHAVANNLNKIKLHHLHLEGA 94

Query: 515  AAYVTPECKDIFRSVSLFMAANVRKSVAEGRSDAIPIFLQDIPKLFHRKIIQPDIALIQV 694
              +     +D  RS SLF   N+R  V  G +D    FL ++P LF +  I+ + +LIQV
Sbjct: 95   TPWTAEGVRDRIRSNSLFTGHNLRACVNNGIADFNSCFLYEVPLLFRKGAIKLNASLIQV 154

Query: 695  SPPDNHGYCSLGTSVDCVRAALVNSKIIIAQVNVNMPRTFGDAIIHVSHIDYAVE--DNA 868
            SPPD  G+CSLGTSVD  RAA+ NS +IIA VN NMPRTFGD +IHVSHIDY V   D  
Sbjct: 155  SPPDAFGFCSLGTSVDTARAAVTNSPLIIAMVNKNMPRTFGDGVIHVSHIDYLVNEADGF 214

Query: 869  PLPEHGVGKAASAEETEIGRLXGENLVEDGATLXMGIGSIPDAVLSALKD 1018
             L +  +G   + +E +IG++  ENLV++GATL MGIG++PDA LSAL +
Sbjct: 215  ELHQRNIG-PQNDQEKKIGKIIAENLVDNGATLQMGIGAVPDAALSALSN 263


>Z46934-7|CAA87047.1|  472|Caenorhabditis elegans Hypothetical protein
            ZK1320.9 protein.
          Length = 472

 Score =  153 bits (370), Expect = 4e-37
 Identities = 84/226 (37%), Positives = 126/226 (55%), Gaps = 1/226 (0%)
 Frame = +2

Query: 341  PEYSTAKEAFEKCLKSGLTVFAQGAAATPVPLLNAMTEVGKSGSLRDIKVVHMHTEKDAA 520
            P+Y +A EA    + S   ++    A+ P  LL A+     S +L +I++ H+    +  
Sbjct: 40   PKYVSADEALAM-VNSDSDIYVGNHASAPNVLLEALCRRVDSANLNNIRMSHLILSGNCP 98

Query: 521  YVTPECKDIFRSVSLFMAANVRKSVAEGRSDAIPIFLQDIPKLFHRKIIQPDIALIQVSP 700
               P+     ++ SLF+    RK+V  G +D  PIFL ++P L+    +  D ALI VSP
Sbjct: 99   QFDPKYHGKIQNNSLFICPGNRKNVNLGAADYTPIFLSEVPSLYTSGTLNVDFALITVSP 158

Query: 701  PDNHGYCSLGTSVDCVRAALVNSKIIIAQVNVNMPRTFGDAIIHVSHIDYAVEDNAPLP- 877
            PD  G+C+LG  +D   AA  ++K IIA VN  MPRT G   +H SH    V+ + P+  
Sbjct: 159  PDELGFCTLGVDIDTTLAAATSAKKIIALVNSTMPRTRGHTTVHSSHFAAMVQTDRPIAF 218

Query: 878  EHGVGKAASAEETEIGRLXGENLVEDGATLXMGIGSIPDAVLSALK 1015
                G+  S  E  IG++  ENLV++GATL +GIG+IPD+ L+A+K
Sbjct: 219  RQSGGEEMSETEQRIGKIIAENLVDNGATLQLGIGAIPDSALAAMK 264



 Score = 31.9 bits (69), Expect = 1.1
 Identities = 18/54 (33%), Positives = 21/54 (38%)
 Frame = +1

Query: 1021 KDLGIXSXMFXVGVIDPVKRGXXXXXLKKNXXGXXXGXFLVGNXXXXKXXXKTP 1182
            KDLG+ + MF  GVID + RG      K    G     F  G     K     P
Sbjct: 267  KDLGVHTEMFSDGVIDLIDRGIINNQKKAFMPGKTVSSFAFGTKEFYKKIDNNP 320


>AL032632-12|CAA21589.3|  333|Caenorhabditis elegans Hypothetical
           protein Y11D7A.1 protein.
          Length = 333

 Score = 87.0 bits (206), Expect = 3e-17
 Identities = 42/105 (40%), Positives = 60/105 (57%)
 Frame = +2

Query: 560 SLFMAANVRKSVAEGRSDAIPIFLQDIPKLFHRKIIQPDIALIQVSPPDNHGYCSLGTSV 739
           SLF+    RK+V  G +D  PIFL ++P ++    +    ALI VSPPD  G+C+LG  +
Sbjct: 54  SLFICPGNRKNVKLGAADYTPIFLSEVPSVYTSGTLNVHFALITVSPPDELGFCTLGVDI 113

Query: 740 DCVRAALVNSKIIIAQVNVNMPRTFGDAIIHVSHIDYAVEDNAPL 874
           D   AA  ++K IIA  N  MPR+ G   +H SH    V+ + P+
Sbjct: 114 DTTLAAATSAKKIIALANSTMPRSRGHTTVHSSHFAAMVQTDRPI 158


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
           ATPase protein.
          Length = 2395

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -2

Query: 694 DLDKSDVGLDDLPVEQLGDVLKEDGNGVG 608
           D  K      DL  EQL D   EDGNG G
Sbjct: 472 DAQKPSTSSSDLTAEQLQDPTAEDGNGDG 500


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
           protein Y111B2A.22 protein.
          Length = 2395

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -2

Query: 694 DLDKSDVGLDDLPVEQLGDVLKEDGNGVG 608
           D  K      DL  EQL D   EDGNG G
Sbjct: 472 DAQKPSTSSSDLTAEQLQDPTAEDGNGDG 500


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,986,024
Number of Sequences: 27780
Number of extensions: 479937
Number of successful extensions: 1338
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3902504250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)