Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E15
         (1290 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    31   0.35 
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    28   2.4  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.3  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    27   4.3  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   9.8  

>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +3

Query: 474 SPHRDDYVRSRDARDESVRSYYKVLCVSALHPKASDEIVKDTLYREYKKYGDFSIKISHE 653
           +P R+   R RD  +     Y +V+  SA HP   D +  D    +Y+K  D   +  ++
Sbjct: 121 TPKREIARRQRDEDEWESDEYEEVVDGSASHPIEEDSVSTDFQNHDYEKSSDPETERLND 180

Query: 654 LDER 665
           L ER
Sbjct: 181 LRER 184


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +3

Query: 633 SIKISHELDERVAYICFRSAEDARDAKHAKPRIILYDKVAIVDPVYEPVRSEYRP---RP 803
           SI + +   E  A++    ++ A      K   +L D V  + PVY P R+E  P    P
Sbjct: 9   SISLGYPPTESSAHLAPSFSDSATSTLSFKS--LLEDPVNPIRPVYTPTRTEITPVTLSP 66

Query: 804 RSITPPDYDRPY 839
             ITP    +PY
Sbjct: 67  IPITPVREFQPY 78


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 531 SYYKVLCVSALHPKASDEIVKDTLYREYKKYGDFSIKISHELDERVAYICFRSAEDARDA 710
           SY   L ++   P   DEIV   +   Y    +F++ +  E+DER+  + F S     D 
Sbjct: 328 SYALALIITV--PYEYDEIVHP-VSTYYTMLSNFTLSLQKEIDERIRNLLFVSLSSGGDN 384

Query: 711 KH 716
           K+
Sbjct: 385 KN 386


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 693 EDARDAKHAKPRII-LYDKVAIVDPVYEPVRSEYRPRPRSITPPDYDRPY 839
           + +R  K   PR I     +A+ + +Y  +R E+ P   + + P Y RP+
Sbjct: 179 DSSRALKKTYPRFIKTLFHLAVGNLMYSAIRLEFDPSSATYSLPPYQRPF 228


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 480 HRDDYVRSRDARDESVRSYYKVLCVSALHPKASDEIVKDTLYREYKK-YGDFSIKISHEL 656
           H D + R    + E+V S  K L    +   +SD +VKD++  + K  + DF    + +L
Sbjct: 11  HLDWFFRESPQKIENVTSPIKTLDFVKVKVSSSDIVVKDSIPHKSKNVFDDFDDGYAIDL 70

Query: 657 DE 662
            E
Sbjct: 71  TE 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,012,297
Number of Sequences: 5004
Number of extensions: 74860
Number of successful extensions: 202
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 703461012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)