Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E13
         (1314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    29   1.4  
SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   7.6  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    27   7.6  

>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +2

Query: 797 VEFYEKEKVVGEEFYQQWPNILRDNSRVWYDWSYMVA 907
           +EF  KE V  E+ Y +  N+L D+SR+  D+S  VA
Sbjct: 290 IEFDNKESV--EKAYFKMQNVLIDDSRIHVDFSQSVA 324


>SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 515 IYLSPVETHCSNVDYFIPDENNETKG-LSDDAMNRLHMAR 631
           ++L+ +E  C NV   I  E+N+  G L+++ +   +MAR
Sbjct: 83  VFLTLIEFPCRNVYAKISTEDNQPDGCLAEENLKHFYMAR 122


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 966 AMAXDGNXMADSSDSXTPHHATIYDQSYQTRELSRNMLGH 847
           A++ +GN  A S  S TP HA I     Q+    + + GH
Sbjct: 538 AISNNGNIAATSCKSQTPEHAVIRLYETQSWNQQQVLKGH 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,001,046
Number of Sequences: 5004
Number of extensions: 72753
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 719358436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)