Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E13
         (1314 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0004 - 133130-133897                                             33   0.66 
07_03_0305 - 16475127-16476017,16476058-16478067                       31   2.0  
06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,985...    31   2.0  
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846...    30   4.7  
07_01_0297 - 2156960-2157736                                           29   8.1  

>09_01_0004 - 133130-133897
          Length = 255

 Score = 32.7 bits (71), Expect = 0.66
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 772 RRQQTCDEHQYSGGGDVAGTALPAADDARP 683
           RR++T D  + +GGG+V  T L A +DA P
Sbjct: 102 RRRRTGDAAEAAGGGEVVATPLDAGEDASP 131


>07_03_0305 - 16475127-16476017,16476058-16478067
          Length = 966

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 527  PVETHCSNVDYFIPDENNETKGLSDDAMNRLHMARS-TVALFIVAFLTLFIAFW 685
            P+  +CS     +PD  +E K LSD     L M     V L++V    LF+  W
Sbjct: 887  PLSRNCSESSKLLPDAVDEDKSLSDGVFLYLGMGIGWVVGLWVVLCTFLFMQRW 940


>06_01_1159 -
           9852316-9852441,9852743-9852838,9852912-9852977,
           9853091-9853180,9853262-9853373,9853515-9853598,
           9853864-9853940,9854823-9854873,9854924-9855031,
           9855703-9855774,9856952-9857011,9857808-9857876,
           9858005-9858088,9858212-9858295,9859106-9859198,
           9859930-9860030,9861155-9861264,9863058-9863104,
           9863693-9863778,9863940-9864012,9864454-9864540,
           9864650-9865301,9866164-9867182,9867702-9867797
          Length = 1180

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 705 QQPTTPVQKAMNNVKNATMNNATVDRAICSLFIASSERPLVSLF 574
           ++ T+   K  +  K +  +NAT    IC++   S ++PLV L+
Sbjct: 248 EKKTSSRSKKSSKAKESAASNATAKAEICTMTSVSEQKPLVPLY 291


>09_04_0676 -
           19383757-19383890,19384308-19384415,19384493-19384679,
           19384937-19385143
          Length = 211

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +2

Query: 425 DSLNNKYFFYTRTRGLFRICYPKERPPTVEIYLSPVETHCSNVDYFIPDEN 577
           D +++K+ F    RG+ R C+  + P    +    + +H S  D    DE+
Sbjct: 83  DKISDKFEFIVHRRGVHRFCFTNKSPYHETVDFDVLVSHFSYYDQHAKDEH 133


>07_01_0297 - 2156960-2157736
          Length = 258

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 498 DRLQLKSTCRRWRLTA 545
           DRL+ ++ CRRWRL A
Sbjct: 51  DRLRFRAVCRRWRLAA 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,607,861
Number of Sequences: 37544
Number of extensions: 557141
Number of successful extensions: 1611
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1607
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4108797156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)