Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E13
         (1314 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical pr...   116   3e-26
AC024847-1|AAK29961.1|  193|Caenorhabditis elegans Hypothetical ...    31   1.8  
Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical pr...    29   5.5  
AF000264-12|AAK70648.2|  467|Caenorhabditis elegans Hypothetical...    29   7.3  

>U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical
           protein F53B3.5 protein.
          Length = 339

 Score =  116 bits (280), Expect = 3e-26
 Identities = 65/210 (30%), Positives = 117/210 (55%), Gaps = 4/210 (1%)
 Frame = +2

Query: 332 STDNWLYIEVKRSNI-QSYAAENSAGNSQVILDSLNNKYFFYTRTRGLFRICYPKERPPT 508
           +TDNW+ ++V R  I  S+  E     S  + ++  +   +++R  GLF +C+P   P  
Sbjct: 43  TTDNWVEVQVNRREIINSFKREPEL--SLRLQNAFGHNNIYFSRNYGLFNLCFPDTVPQD 100

Query: 509 VEIYLSPVETHC--SNVDYFIPDENNETKGLSDDAMNRLHMARSTVALFIVAFLTLFIAF 682
           V  + S + + C  SN ++ +P+   E    S++ + R + A++T+  ++V  + + ++F
Sbjct: 101 VGSF-SKMGSPCIWSN-EFMVPESKKEH--FSNNELYRHYAAKATIIAYVVGIVFVVLSF 156

Query: 683 WTGVVGCWKRSPGNITATAILMLVTCLLSAGAMALWHGVEFYEKEKVVGEEFYQQWPNIL 862
             G++GCW RS   I +T IL+++  L  + AM LWH V + E+  +  E +Y+ W  IL
Sbjct: 157 IVGLIGCWNRSKKFIMSTGILLILAGLSMSVAMLLWHYVAYSERYTLDVEPYYKSWEPIL 216

Query: 863 RDNSRVWYDWSYMVAWCGVXLSLL-SAIXF 949
           +  SR  Y WSY+V+W G+   ++ SA  F
Sbjct: 217 KLTSRHNYGWSYIVSWIGIGFIVIGSAFMF 246


>AC024847-1|AAK29961.1|  193|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.8 protein.
          Length = 193

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 500 VFLSGSRCGKDLSFWYRRNICCSS 429
           VFL G RC +D+  W R++  CSS
Sbjct: 162 VFLEGKRCKEDIDTWLRQDNKCSS 185


>Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical
           protein F27E5.5 protein.
          Length = 377

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = -3

Query: 583 FVVLVGNEVVYITAVSLHRRQVDFNCRRSFFRVADAEKTSRSGIEEI 443
           FV +V   V+ ITAV   R+ V FN  R+ FR    + TS + I +I
Sbjct: 192 FVAVVAGAVMNITAVLTFRKVVSFN--RTLFRQRSFKLTSLTEIYQI 236


>AF000264-12|AAK70648.2|  467|Caenorhabditis elegans Hypothetical
           protein F43E2.1 protein.
          Length = 467

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 418 HP--RQLEQQIFLLYQNERSFPHLLPERK 498
           HP  +QLEQ I + Y N+R    +L ERK
Sbjct: 24  HPSLKQLEQDINIFYMNQRQSQSMLEERK 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,329,678
Number of Sequences: 27780
Number of extensions: 481260
Number of successful extensions: 1235
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3673557334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)