Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_E12
(1355 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 165 7e-41
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 165 7e-41
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 165 7e-41
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 57 4e-08
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 30 3.7
03_05_0291 - 22837412-22838128 29 6.4
06_01_0902 - 6934236-6935546 29 8.5
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 165 bits (401), Expect = 7e-41
Identities = 73/89 (82%), Positives = 84/89 (94%)
Frame = +3
Query: 192 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 371
K IKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNA
Sbjct: 43 KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNA 102
Query: 372 GVIVNNKGEMKGSAITGPVAKECADLWPR 458
GVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 103 GVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 43.6 bits (98), Expect = 4e-04
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 64 MSKRGRGGSAGAKFRISLGLPAGSS 138
MSKRGRGGSAG KFR+SLGLP ++
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAAT 25
Score = 42.3 bits (95), Expect = 8e-04
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +2
Query: 128 LGAVINCADNTGAKNLYVIAVQG 196
+ A +NCADNTGAKNLY+I+V+G
Sbjct: 22 VAATVNCADNTGAKNLYIISVKG 44
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 165 bits (401), Expect = 7e-41
Identities = 73/89 (82%), Positives = 84/89 (94%)
Frame = +3
Query: 192 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 371
K IKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNA
Sbjct: 43 KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNA 102
Query: 372 GVIVNNKGEMKGSAITGPVAKECADLWPR 458
GVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 103 GVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 43.6 bits (98), Expect = 4e-04
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 64 MSKRGRGGSAGAKFRISLGLPAGSS 138
MSKRGRGGSAG KFR+SLGLP ++
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAAT 25
Score = 42.3 bits (95), Expect = 8e-04
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +2
Query: 128 LGAVINCADNTGAKNLYVIAVQG 196
+ A +NCADNTGAKNLY+I+V+G
Sbjct: 22 VAATVNCADNTGAKNLYIISVKG 44
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 165 bits (401), Expect = 7e-41
Identities = 73/89 (82%), Positives = 84/89 (94%)
Frame = +3
Query: 192 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 371
K IKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNA
Sbjct: 60 KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNA 119
Query: 372 GVIVNNKGEMKGSAITGPVAKECADLWPR 458
GVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 120 GVIVNPKGEMKGSAITGPIGKECADLWPR 148
Score = 42.3 bits (95), Expect = 8e-04
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +2
Query: 128 LGAVINCADNTGAKNLYVIAVQG 196
+ A +NCADNTGAKNLY+I+V+G
Sbjct: 39 VAATVNCADNTGAKNLYIISVKG 61
Score = 35.9 bits (79), Expect = 0.074
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1
Query: 76 GRGGSAGAKFRISLGLPAGSS 138
GRGGSAG KFR+SLGLP ++
Sbjct: 22 GRGGSAGNKFRMSLGLPVAAT 42
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 56.8 bits (131), Expect = 4e-08
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Frame = +3
Query: 237 GDMIVATVKKGKPELRKK---VMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKG 407
GD I+ +VK+ +P + K V+ VV+R R DG I F+DNA V+VNNKGE+ G
Sbjct: 84 GDTIIGSVKEAQPRGKVKKGDVVYGVVVRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIG 143
Query: 408 SAITGPVAKE 437
+ + GPV E
Sbjct: 144 TRVFGPVPHE 153
>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
Length = 1041
Score = 30.3 bits (65), Expect = 3.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 90 RGSEIPYLPGSPSWEQ*STAPTTQ 161
RG+ +P L +PSWE+ S APT +
Sbjct: 569 RGAAVPTLKMNPSWEKPSVAPTLE 592
>03_05_0291 - 22837412-22838128
Length = 238
Score = 29.5 bits (63), Expect = 6.4
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -2
Query: 472 AFEAIRGHRSAHSLATGPVMAEPFI--SPLLLTMTPALSS 359
+++A+ GH+++H T P MA + P T +PA SS
Sbjct: 100 SYQALGGHKTSHRPRTPPTMAAVVVVDEPAATTASPAASS 139
>06_01_0902 - 6934236-6935546
Length = 436
Score = 29.1 bits (62), Expect = 8.5
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = +1
Query: 82 GGSAGAKFRISLGLPAGSSNQLRRQHRGKESVCDRCPRLSKVA*TDCRRPVPGT*LWPQS 261
GG GA ++ AGSS R+ RG+ V D P + VA P+P L PQ
Sbjct: 11 GGGGGAMVEVAFASSAGSSAAAPRRLRGELVVRDAIP-YAGVAPPPPALPLPQPQLQPQV 69
Query: 262 KRVNLNSG 285
+ G
Sbjct: 70 QATTSGGG 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,685,584
Number of Sequences: 37544
Number of extensions: 590585
Number of successful extensions: 1470
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1470
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4271752284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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