Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_E12
(1355 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23 p... 174 7e-43
X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein pr... 173 9e-43
X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17 pro... 173 9e-43
BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein. 173 9e-43
BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23 p... 173 9e-43
BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23 p... 173 9e-43
BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal pr... 173 9e-43
AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23 p... 173 9e-43
BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein. 64 1e-09
>BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 174 bits (423), Expect = 7e-43
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +3
Query: 192 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 371
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVRPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 372 GVIVNNKGEMKGSAITGPVAKECADLWPR 458
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 48.0 bits (109), Expect = 8e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 64 MSKRGRGGSAGAKFRISLGLPAGS 135
MSKRGRGGS+GAKFRISLGLP G+
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGA 24
Score = 46.8 bits (106), Expect = 2e-04
Identities = 19/23 (82%), Positives = 23/23 (100%)
Frame = +2
Query: 128 LGAVINCADNTGAKNLYVIAVQG 196
+GAVINCADNTGAKNLY+I+V+G
Sbjct: 22 VGAVINCADNTGAKNLYIISVKG 44
>X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein
protein.
Length = 140
Score = 173 bits (422), Expect = 9e-43
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +3
Query: 192 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 371
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 372 GVIVNNKGEMKGSAITGPVAKECADLWPR 458
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 48.0 bits (109), Expect = 8e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 64 MSKRGRGGSAGAKFRISLGLPAGS 135
MSKRGRGGS+GAKFRISLGLP G+
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGA 24
Score = 46.8 bits (106), Expect = 2e-04
Identities = 19/23 (82%), Positives = 23/23 (100%)
Frame = +2
Query: 128 LGAVINCADNTGAKNLYVIAVQG 196
+GAVINCADNTGAKNLY+I+V+G
Sbjct: 22 VGAVINCADNTGAKNLYIISVKG 44
>X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17
protein.
Length = 140
Score = 173 bits (422), Expect = 9e-43
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +3
Query: 192 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 371
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 372 GVIVNNKGEMKGSAITGPVAKECADLWPR 458
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 48.0 bits (109), Expect = 8e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 64 MSKRGRGGSAGAKFRISLGLPAGS 135
MSKRGRGGS+GAKFRISLGLP G+
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGA 24
Score = 46.8 bits (106), Expect = 2e-04
Identities = 19/23 (82%), Positives = 23/23 (100%)
Frame = +2
Query: 128 LGAVINCADNTGAKNLYVIAVQG 196
+GAVINCADNTGAKNLY+I+V+G
Sbjct: 22 VGAVINCADNTGAKNLYIISVKG 44
>BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein.
Length = 140
Score = 173 bits (422), Expect = 9e-43
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +3
Query: 192 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 371
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 372 GVIVNNKGEMKGSAITGPVAKECADLWPR 458
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 48.0 bits (109), Expect = 8e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 64 MSKRGRGGSAGAKFRISLGLPAGS 135
MSKRGRGGS+GAKFRISLGLP G+
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGA 24
Score = 46.8 bits (106), Expect = 2e-04
Identities = 19/23 (82%), Positives = 23/23 (100%)
Frame = +2
Query: 128 LGAVINCADNTGAKNLYVIAVQG 196
+GAVINCADNTGAKNLY+I+V+G
Sbjct: 22 VGAVINCADNTGAKNLYIISVKG 44
>BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 173 bits (422), Expect = 9e-43
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +3
Query: 192 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 371
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 372 GVIVNNKGEMKGSAITGPVAKECADLWPR 458
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 48.0 bits (109), Expect = 8e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 64 MSKRGRGGSAGAKFRISLGLPAGS 135
MSKRGRGGS+GAKFRISLGLP G+
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGA 24
Score = 46.8 bits (106), Expect = 2e-04
Identities = 19/23 (82%), Positives = 23/23 (100%)
Frame = +2
Query: 128 LGAVINCADNTGAKNLYVIAVQG 196
+GAVINCADNTGAKNLY+I+V+G
Sbjct: 22 VGAVINCADNTGAKNLYIISVKG 44
>BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 173 bits (422), Expect = 9e-43
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +3
Query: 192 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 371
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 372 GVIVNNKGEMKGSAITGPVAKECADLWPR 458
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 48.0 bits (109), Expect = 8e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 64 MSKRGRGGSAGAKFRISLGLPAGS 135
MSKRGRGGS+GAKFRISLGLP G+
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGA 24
Score = 46.8 bits (106), Expect = 2e-04
Identities = 19/23 (82%), Positives = 23/23 (100%)
Frame = +2
Query: 128 LGAVINCADNTGAKNLYVIAVQG 196
+GAVINCADNTGAKNLY+I+V+G
Sbjct: 22 VGAVINCADNTGAKNLYIISVKG 44
>BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal
protein L23 protein.
Length = 134
Score = 173 bits (422), Expect = 9e-43
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +3
Query: 192 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 371
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 37 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 96
Query: 372 GVIVNNKGEMKGSAITGPVAKECADLWPR 458
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 97 GVIVNNKGEMKGSAITGPVAKECADLWPR 125
Score = 46.8 bits (106), Expect = 2e-04
Identities = 19/23 (82%), Positives = 23/23 (100%)
Frame = +2
Query: 128 LGAVINCADNTGAKNLYVIAVQG 196
+GAVINCADNTGAKNLY+I+V+G
Sbjct: 16 VGAVINCADNTGAKNLYIISVKG 38
Score = 35.9 bits (79), Expect = 0.34
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1
Query: 82 GGSAGAKFRISLGLPAGS 135
GGS+GAKFRISLGLP G+
Sbjct: 1 GGSSGAKFRISLGLPVGA 18
>AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 173 bits (422), Expect = 9e-43
Identities = 80/89 (89%), Positives = 85/89 (95%)
Frame = +3
Query: 192 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 371
K IKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+DGVF+YFEDNA
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNA 102
Query: 372 GVIVNNKGEMKGSAITGPVAKECADLWPR 458
GVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 103 GVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 48.0 bits (109), Expect = 8e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 64 MSKRGRGGSAGAKFRISLGLPAGS 135
MSKRGRGGS+GAKFRISLGLP G+
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGA 24
Score = 46.8 bits (106), Expect = 2e-04
Identities = 19/23 (82%), Positives = 23/23 (100%)
Frame = +2
Query: 128 LGAVINCADNTGAKNLYVIAVQG 196
+GAVINCADNTGAKNLY+I+V+G
Sbjct: 22 VGAVINCADNTGAKNLYIISVKG 44
>BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein.
Length = 77
Score = 64.1 bits (149), Expect = 1e-09
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = +3
Query: 192 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKK 290
K IKGRLNRLPAAG GDM++ATVKKGKPELRKK
Sbjct: 43 KGIKGRLNRLPAAGVGDMVMATVKKGKPELRKK 75
Score = 48.0 bits (109), Expect = 8e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 64 MSKRGRGGSAGAKFRISLGLPAGS 135
MSKRGRGGS+GAKFRISLGLP G+
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGA 24
Score = 46.8 bits (106), Expect = 2e-04
Identities = 19/23 (82%), Positives = 23/23 (100%)
Frame = +2
Query: 128 LGAVINCADNTGAKNLYVIAVQG 196
+GAVINCADNTGAKNLY+I+V+G
Sbjct: 22 VGAVINCADNTGAKNLYIISVKG 44
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,747,085
Number of Sequences: 237096
Number of extensions: 3124987
Number of successful extensions: 8245
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8245
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 19621669972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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