Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E12
         (1355 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   163   3e-40
U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical pr...    33   0.46 

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  163 bits (396), Expect = 3e-40
 Identities = 75/87 (86%), Positives = 80/87 (91%)
 Frame = +3

Query: 198 IKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 377
           I+GRLNRLP+AG GDM V +VKKGKPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGV
Sbjct: 45  IRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGV 104

Query: 378 IVNNKGEMKGSAITGPVAKECADLWPR 458
           IVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 105 IVNNKGEMKGSAITGPVAKECADLWPR 131



 Score = 46.8 bits (106), Expect = 4e-05
 Identities = 20/24 (83%), Positives = 23/24 (95%)
 Frame = +1

Query: 64  MSKRGRGGSAGAKFRISLGLPAGS 135
           MSKRGRGG++GAKFRISLGLP G+
Sbjct: 1   MSKRGRGGASGAKFRISLGLPVGA 24



 Score = 43.6 bits (98), Expect = 3e-04
 Identities = 18/23 (78%), Positives = 22/23 (95%)
 Frame = +2

Query: 128 LGAVINCADNTGAKNLYVIAVQG 196
           +GAV+NCADNTGAKNL+VI+V G
Sbjct: 22  VGAVMNCADNTGAKNLFVISVYG 44


>U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical
           protein B0403.5 protein.
          Length = 413

 Score = 33.1 bits (72), Expect = 0.46
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -3

Query: 192 WTAITYRFFAPVLSAQLITAPSWETQGDTEFRSRGTTTSSLRHF 61
           ++  T  FF PVL+ + +T  +W T       ++ TTT++LR++
Sbjct: 353 YSTSTTPFFRPVLTTRPVTTTTWRTTRRITTTTKPTTTTTLRNY 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,762,440
Number of Sequences: 27780
Number of extensions: 460498
Number of successful extensions: 1049
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3819250826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)