Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E11
         (1270 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory s...    85   3e-17
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc...    28   3.2  
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.2  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   5.5  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   5.5  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    27   7.3  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    27   7.3  

>SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory
           subunit Suc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 113

 Score = 84.6 bits (200), Expect = 3e-17
 Identities = 39/80 (48%), Positives = 50/80 (62%), Gaps = 9/80 (11%)
 Frame = +3

Query: 186 VDQIQYSERYTDDVYEYRHVILPPDIARMVPKSHLMTET---------EWRNLGVQQSPG 338
           +DQI YS RY DD YEYRHV+LP  + + +P  +   ET         EWR LG+ QS G
Sbjct: 22  IDQIHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLG 81

Query: 339 WLHFMVHNPEPHVLLFRRPR 398
           W  + VH PEPH+LLF+R +
Sbjct: 82  WEMYEVHVPEPHILLFKREK 101


>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 839 SVLYFLILIRRSKLKIYLWLNLLSI 765
           S+ +FL++ R+ K+++  W N LSI
Sbjct: 2   SIKFFLLVSRQGKVRLAKWFNTLSI 26


>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -2

Query: 807 VKVKNLSMV--KFTLNNKQVTTQCTLVFLCRAYDPSSSRELS-TNKPL 673
           V+V +L +V   FT+ NK+V+    L FL    D + + E S T++PL
Sbjct: 322 VRVTHLLLVIQAFTIKNKEVSDDEQLCFLIHLNDTNHNLEFSTTSQPL 369


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 553 KNCSIYYKLADINYYYITLFCLS 621
           KN  + Y+L  I YYY  L CLS
Sbjct: 56  KNILLKYELFIIYYYYYLLICLS 78


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 304 SGETLVFSRVPAGSTLWCTILNPMFYYLEDLELIYRLPWNGLDT 435
           +G+ +VF+ V     LW  + NP F    DL+L  +LP    +T
Sbjct: 310 TGDAMVFTDVEDNIHLWSPLENPSF---SDLKLPIQLPNTSTET 350


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 621 SKFKSGVLIQLFMTLDNTKACLWII 695
           S   S  L ++F   DNTKAC W I
Sbjct: 244 SVLSSCALFKIFHDNDNTKACNWTI 268


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 248 LTTGYSPHGAKIPSYDRDRVAKPWCSAESRLAPLYGAQS*TPCSII 385
           L   YSP+G  + S  RD+  + W S  ++   L    + +P + +
Sbjct: 225 LCVNYSPNGVFLASCGRDKTIRIWDSTSNKKKSLITINNVSPLNCV 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,140,143
Number of Sequences: 5004
Number of extensions: 82211
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 689550766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)