Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E11
         (1270 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42438-3|AAF99866.1|   94|Caenorhabditis elegans Downstream of m...   109   4e-24
AF016224-3|AAC27123.1|   94|Caenorhabditis elegans cyclin kinase...   109   4e-24
AC025726-28|AAK73928.1|  118|Caenorhabditis elegans Hypothetical...   108   7e-24
Z83239-6|CAB05803.1|  324|Caenorhabditis elegans Hypothetical pr...    29   9.3  

>U42438-3|AAF99866.1|   94|Caenorhabditis elegans Downstream of mes
           (in same operon)protein 6 protein.
          Length = 94

 Score =  109 bits (262), Expect = 4e-24
 Identities = 41/65 (63%), Positives = 56/65 (86%)
 Frame = +3

Query: 201 YSERYTDDVYEYRHVILPPDIARMVPKSHLMTETEWRNLGVQQSPGWLHFMVHNPEPHVL 380
           YS +Y DD +EYRHV +  D+++++PK+ LM+ETEWR+LG+QQSPGW+H+M+H PE HVL
Sbjct: 10  YSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGPERHVL 69

Query: 381 LFRRP 395
           LFRRP
Sbjct: 70  LFRRP 74


>AF016224-3|AAC27123.1|   94|Caenorhabditis elegans cyclin kinase
           subunit protein.
          Length = 94

 Score =  109 bits (262), Expect = 4e-24
 Identities = 41/65 (63%), Positives = 56/65 (86%)
 Frame = +3

Query: 201 YSERYTDDVYEYRHVILPPDIARMVPKSHLMTETEWRNLGVQQSPGWLHFMVHNPEPHVL 380
           YS +Y DD +EYRHV +  D+++++PK+ LM+ETEWR+LG+QQSPGW+H+M+H PE HVL
Sbjct: 10  YSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGPERHVL 69

Query: 381 LFRRP 395
           LFRRP
Sbjct: 70  LFRRP 74


>AC025726-28|AAK73928.1|  118|Caenorhabditis elegans Hypothetical
           protein Y71G12B.27 protein.
          Length = 118

 Score =  108 bits (260), Expect = 7e-24
 Identities = 46/71 (64%), Positives = 54/71 (76%)
 Frame = +3

Query: 186 VDQIQYSERYTDDVYEYRHVILPPDIARMVPKSHLMTETEWRNLGVQQSPGWLHFMVHNP 365
           ++ I YS RY DD YEYRHVILP  ++R VPK  L++E EWR  GVQQS GW H+MVHNP
Sbjct: 1   MEDIYYSPRYEDDEYEYRHVILPQAVSRKVPKGRLLSEAEWRRAGVQQSLGWEHYMVHNP 60

Query: 366 EPHVLLFRRPR 398
           E H+LLFRR R
Sbjct: 61  EKHILLFRRKR 71


>Z83239-6|CAB05803.1|  324|Caenorhabditis elegans Hypothetical
           protein T09F5.10 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 257 RW*DDMPVF-VDVICISFRILNLVHGHYCSFNCVE 156
           RW D  P + + ++C+      +  GHYC FN ++
Sbjct: 38  RWKDSFPEYRLKMVCLKDTTRVIAVGHYCYFNALK 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,616,789
Number of Sequences: 27780
Number of extensions: 453345
Number of successful extensions: 888
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3537281262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)