Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E11
         (1270 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   9.9  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   9.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.9  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -3

Query: 881 NISFINKYLMNMLTSVLYFLILI---RRSKLKIYLWLN 777
           NI  I K     +T  +  + LI   + SKLKIY W N
Sbjct: 61  NIFKIIKSTNEKITRYIIRMFLISQQKTSKLKIYKWNN 98


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -3

Query: 881 NISFINKYLMNMLTSVLYFLILI---RRSKLKIYLWLN 777
           NI  I K     +T  +  + LI   + SKLKIY W N
Sbjct: 44  NIFKIIKSTNEKITRYIIRMFLISQQKTSKLKIYKWNN 81


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 861  LVYERNINTKYVLGNNYIKK 920
            LVY+RNINT  + G   ++K
Sbjct: 1219 LVYKRNINTYTLDGVGSVEK 1238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 287,796
Number of Sequences: 438
Number of extensions: 5755
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43462806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)