Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E10
         (1344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...   141   2e-34
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    28   2.6  
SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po...    27   7.8  

>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score =  141 bits (341), Expect = 2e-34
 Identities = 72/169 (42%), Positives = 106/169 (62%), Gaps = 6/169 (3%)
 Frame = +1

Query: 58  EVSLXFXALLFSEIVQYSQNRSHSIQDLQFKLSEIGQDVGTRLLDLYFVRERNSKREIKL 237
           +V+L   A +FSE++Q  Q++   IQ+ + KL+E G  VG +L++L   RERN KRE ++
Sbjct: 40  DVNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELVVWRERNPKRETRI 99

Query: 238 LNMLLFIKSTLWKVLFGKEADKLEHANDDERTYYIIEKDALVNKFISVPKDKGSLNCAIF 417
           L +L +I S++WK LFGK AD LE + +    Y I++ + L+NKFISVPK+   LNC  +
Sbjct: 100 LGILQYIHSSVWKYLFGKHADSLEKSKEASDEYMIVDNNPLLNKFISVPKEMNQLNCCAY 159

Query: 418 NAGIIEAVLTRSGFPAKVTAH------WHKGTTYMVKFDDSVITRDKTL 546
            AGIIE  L  + FP K +AH      +   T  ++K D SVI R++ L
Sbjct: 160 LAGIIEGFLDSAQFPCKASAHSVPLSQYPYRTVILIKLDPSVIAREEVL 208


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 79  ALLFSEIVQYSQNRSHSIQDLQFKLSEIG 165
           ALL S+   YSQ R  SIQ+++  ++E+G
Sbjct: 211 ALLESQTDTYSQQRMSSIQNIESTITELG 239


>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 97  IVQYSQNRSHSIQDLQFKLSEIG 165
           IV+ S N  H   D+Q KL E+G
Sbjct: 109 IVEESPNSQHLAHDIQLKLDELG 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,538,010
Number of Sequences: 5004
Number of extensions: 56612
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 739230216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)