Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_E10
(1344 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0444 + 29436021-29436092,29437910-29437998,29438510-294385... 99 7e-21
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 30 4.8
02_05_0396 - 28600855-28601475,28601579-28601761,28601970-286021... 30 4.8
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 30 4.8
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 6.3
07_03_1136 + 24218601-24218734,24218769-24219906 29 8.4
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 29 8.4
07_01_0479 + 3606663-3607448 29 8.4
03_01_0515 - 3864796-3865425 29 8.4
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 29 8.4
>01_06_0444 +
29436021-29436092,29437910-29437998,29438510-29438573,
29439213-29439289,29439358-29439418,29439508-29439615,
29440139-29440168
Length = 166
Score = 99.1 bits (236), Expect = 7e-21
Identities = 70/179 (39%), Positives = 92/179 (51%), Gaps = 7/179 (3%)
Frame = +1
Query: 22 NSLXXPXRXXKGEVSLXFXALLFSEIVQYSQNRSHSIQDLQFKLSEIGQDVGTRLLDLYF 201
N L P + EVSL A LFSE+VQY+Q + +I +L+ +L + G VG R+L+L
Sbjct: 12 NVLDKPLSRGRQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLC 71
Query: 202 VRERNSKREIKLLNMLLFIKSTLWKVLFGKEADKLEHANDDERTYYIIEKDALVNKFISV 381
RE K AD LE + E Y I EK+ LVN+FISV
Sbjct: 72 HRE--------------------------KVADSLEKGTEHEDEYMISEKELLVNRFISV 105
Query: 382 PKDKGSLNCAIFNAGIIEAVLTRSGFPAKVTAHW-------HKGTTYMVKFDDSVITRD 537
PKD G+ NC F AGI VL +GFPA VTAH+ TT ++KF + V+ R+
Sbjct: 106 PKDMGAFNCGAFVAGI--GVLENAGFPAVVTAHFVPIEGQQRPRTTILIKFAEEVLQRE 162
>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 29.9 bits (64), Expect = 4.8
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +1
Query: 142 QFKLSEIG--QDVGTRLLDLYFVRERNSKREIKLLNMLLFIKSTLWKVLFGKEADKLEHA 315
Q KLS G + + L L+ + + N+L STL V+ G + L ++
Sbjct: 799 QLKLSRSGFLESIWASCLSLFAL---GPAERLDAYNILSLYLSTLKHVILGPDEYDLRNS 855
Query: 316 ND--DERTYYIIEKDALVNK 369
ND DE +++KD+LV K
Sbjct: 856 NDFWDEIRRGLVDKDSLVRK 875
>02_05_0396 -
28600855-28601475,28601579-28601761,28601970-28602129,
28602217-28602795,28603044-28603618,28604161-28604176,
28605566-28605663,28605774-28606286
Length = 914
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 473 VTFAGNPLLVKTASMMPALKMAQFNEPLSFGTLINLF 363
+T P+L+ + MP +N L FGT+ N F
Sbjct: 804 ITLTNLPVLIGATASMPPATAVNYNSWLLFGTIFNFF 840
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 29.9 bits (64), Expect = 4.8
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Frame = +3
Query: 1143 PXXPPPXXXXKXXPXXXGGXPX-GXXXPXXPXXXPXPPXPP 1262
P P P K P G P G P P P PP PP
Sbjct: 198 PKPPKPGPKPKPKPPKPGPKPKPGPPQPWWPIPFPKPPCPP 238
>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 6.3
Identities = 22/84 (26%), Positives = 22/84 (26%)
Frame = +2
Query: 1091 PXGPXXPXPXXGXVXGFSXGPPPXXXXKXXXPXXXGXPXGXXXSXXPPXXPXXPXXXXXX 1270
P P P P G FS PPP P P S PP P P
Sbjct: 545 PPPPPPPPPPSGNKPAFSPPPPP------PPPPPPPLPQSNYASSQPPPPPPPPPLPNCL 598
Query: 1271 XPXXFPXXXGXXXXPXXXXXXXPP 1342
P P P PP
Sbjct: 599 VPSPPPPPPPPPILPNRSVPPPPP 622
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.1 bits (62), Expect = 8.4
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = -3
Query: 1261 GGXGGXGXXXGXXGXXXPXGXPPXXWGXXFXXXXGGGXXGKPXHXAXXG 1115
GG GG G G G G P G GGG G P G
Sbjct: 177 GGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLGGGGGEGGAPERVIGGG 225
>07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 29.1 bits (62), Expect = 8.4
Identities = 19/67 (28%), Positives = 21/67 (31%)
Frame = +3
Query: 1143 PXXPPPXXXXKXXPXXXGGXPXGXXXPXXPXXXPXPPXPPXXXNLXXSPWXXGXXXPPXX 1322
P PPP P P P P PP PP N+ +P G PP
Sbjct: 204 PPPPPPP------PLPASSEPVDPSAASLPPLPPPPPPPPKPANIAGAP---GLPLPPPP 254
Query: 1323 XXGXXPP 1343
PP
Sbjct: 255 PPPPGPP 261
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.1 bits (62), Expect = 8.4
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Frame = +3
Query: 1140 FPXXPPPXXXXKXXPXXXGGXPXG--XXXPXXPXXXPXPPXPP 1262
F PPP + P GG P G P P PP PP
Sbjct: 208 FMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPPFRPGMPPPPP 250
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.1 bits (62), Expect = 8.4
Identities = 16/63 (25%), Positives = 19/63 (30%)
Frame = +3
Query: 1155 PPXXXXKXXPXXXGGXPXGXXXPXXPXXXPXPPXPPXXXNLXXSPWXXGXXXPPXXXXGX 1334
PP + P P P P P P PP ++ SP PP
Sbjct: 39 PPSPPTEASPPPLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAAS 98
Query: 1335 XPP 1343
PP
Sbjct: 99 PPP 101
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 29.1 bits (62), Expect = 8.4
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 488 LCQCAVTFAGNPLLVKTASMMPALKMAQFNEPLSF-GTLIN 369
LC C+ F GNP L+ + + ++F P S GT IN
Sbjct: 280 LCNCSAGFEGNPYLLDGCQDINECEDSRFKYPCSVPGTCIN 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,122,112
Number of Sequences: 37544
Number of extensions: 427634
Number of successful extensions: 1000
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4225193676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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