Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_E10
(1344 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117195-11|CAB55019.1| 185|Caenorhabditis elegans Hypothetical... 211 7e-55
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 3.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 3.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 3.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 7.5
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 29 7.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 7.5
Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical pr... 29 9.9
S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein. 29 9.9
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 9.9
>AL117195-11|CAB55019.1| 185|Caenorhabditis elegans Hypothetical
protein Y57A10A.16 protein.
Length = 185
Score = 211 bits (516), Expect = 7e-55
Identities = 96/167 (57%), Positives = 127/167 (76%)
Frame = +1
Query: 52 KGEVSLXFXALLFSEIVQYSQNRSHSIQDLQFKLSEIGQDVGTRLLDLYFVRERNSKREI 231
K E++L A+LFSE+V Y+QNRS ++ D+ K++ G+ VG R+ D+ +RE+ KRE
Sbjct: 16 KTEINLSTFAVLFSEMVLYAQNRSETVTDIHDKIASYGKQVGLRMFDIITLREKGYKRET 75
Query: 232 KLLNMLLFIKSTLWKVLFGKEADKLEHANDDERTYYIIEKDALVNKFISVPKDKGSLNCA 411
KLL ML+FIKST+WK LFGKEADKLE +NDD TY +IEKD +VN +ISVP+DKG LNCA
Sbjct: 76 KLLGMLMFIKSTVWKNLFGKEADKLERSNDDHCTYLLIEKDPMVNTYISVPRDKGVLNCA 135
Query: 412 IFNAGIIEAVLTRSGFPAKVTAHWHKGTTYMVKFDDSVITRDKTLDD 552
F AGI+EA+L + F KVTAHWH GT Y+++FD+SVI R+ +L D
Sbjct: 136 AFAAGIVEAILESASFKCKVTAHWHNGTAYVIQFDESVIARENSLLD 182
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 3.2
Identities = 29/102 (28%), Positives = 31/102 (30%), Gaps = 2/102 (1%)
Frame = +2
Query: 989 LXAPGXSXGXXXXXPPRGXXGXPXXXGXXRKNLXPX-GPXXPXPXXGXVXGFSXGPPPXX 1165
L AP S G PP G P G L P G P P G + + GPPP
Sbjct: 693 LSAPSTSAGGSSALPPI-TGGPPPPPG-----LPPITGGPPPPPPPGGLPPITGGPPPPP 746
Query: 1166 XXKXXXPXXXG-XPXGXXXSXXPPXXPXXPXXXXXXXPXXFP 1288
P G P PP P P P P
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 29.1 bits (62), Expect = 7.5
Identities = 20/64 (31%), Positives = 20/64 (31%)
Frame = +3
Query: 1152 PPPXXXXKXXPXXXGGXPXGXXXPXXPXXXPXPPXPPXXXNLXXSPWXXGXXXPPXXXXG 1331
PPP P GG P P PP PP L P G PP G
Sbjct: 713 PPPPPGL---PPITGGPPPPPPPGGLPPITGGPPPPPPPGGL--PPISGGPPPPPPPPGG 767
Query: 1332 XXPP 1343
PP
Sbjct: 768 CPPP 771
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 3.2
Identities = 29/102 (28%), Positives = 31/102 (30%), Gaps = 2/102 (1%)
Frame = +2
Query: 989 LXAPGXSXGXXXXXPPRGXXGXPXXXGXXRKNLXPX-GPXXPXPXXGXVXGFSXGPPPXX 1165
L AP S G PP G P G L P G P P G + + GPPP
Sbjct: 693 LSAPSTSAGGSSALPPI-TGGPPPPPG-----LPPITGGPPPPPPPGGLPPITGGPPPPP 746
Query: 1166 XXKXXXPXXXG-XPXGXXXSXXPPXXPXXPXXXXXXXPXXFP 1288
P G P PP P P P P
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 29.1 bits (62), Expect = 7.5
Identities = 20/64 (31%), Positives = 20/64 (31%)
Frame = +3
Query: 1152 PPPXXXXKXXPXXXGGXPXGXXXPXXPXXXPXPPXPPXXXNLXXSPWXXGXXXPPXXXXG 1331
PPP P GG P P PP PP L P G PP G
Sbjct: 713 PPPPPGL---PPITGGPPPPPPPGGLPPITGGPPPPPPPGGL--PPISGGPPPPPPPPGG 767
Query: 1332 XXPP 1343
PP
Sbjct: 768 CPPP 771
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 3.2
Identities = 29/102 (28%), Positives = 31/102 (30%), Gaps = 2/102 (1%)
Frame = +2
Query: 989 LXAPGXSXGXXXXXPPRGXXGXPXXXGXXRKNLXPX-GPXXPXPXXGXVXGFSXGPPPXX 1165
L AP S G PP G P G L P G P P G + + GPPP
Sbjct: 276 LSAPSTSAGGSSALPPI-TGGPPPPPG-----LPPITGGPPPPPPPGGLPPITGGPPPPP 329
Query: 1166 XXKXXXPXXXG-XPXGXXXSXXPPXXPXXPXXXXXXXPXXFP 1288
P G P PP P P P P
Sbjct: 330 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371
Score = 29.1 bits (62), Expect = 7.5
Identities = 20/64 (31%), Positives = 20/64 (31%)
Frame = +3
Query: 1152 PPPXXXXKXXPXXXGGXPXGXXXPXXPXXXPXPPXPPXXXNLXXSPWXXGXXXPPXXXXG 1331
PPP P GG P P PP PP L P G PP G
Sbjct: 296 PPPPPGL---PPITGGPPPPPPPGGLPPITGGPPPPPPPGGL--PPISGGPPPPPPPPGG 350
Query: 1332 XXPP 1343
PP
Sbjct: 351 CPPP 354
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 7.5
Identities = 19/73 (26%), Positives = 21/73 (28%), Gaps = 4/73 (5%)
Frame = +3
Query: 1137 GFPXXPPPXXXXKXXPXXXGG----XPXGXXXPXXPXXXPXPPXPPXXXNLXXSPWXXGX 1304
G P PPP + P GG P G P P P P + P
Sbjct: 312 GMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRP 371
Query: 1305 XXPPXXXXGXXPP 1343
PP PP
Sbjct: 372 PAPPSGHGMIPPP 384
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein 33
protein.
Length = 304
Score = 29.1 bits (62), Expect = 7.5
Identities = 19/77 (24%), Positives = 20/77 (25%)
Frame = +3
Query: 1113 NPXXAXWXGFPXXPPPXXXXKXXPXXXGGXPXGXXXPXXPXXXPXPPXPPXXXNLXXSPW 1292
NP G P P P P P P P PP P +P
Sbjct: 118 NPGRPGKPGAPGLPGNPGKPPVQPCEPITPPPCKPCPDGPAGPPGPPGAPGDAGTNGAPG 177
Query: 1293 XXGXXXPPXXXXGXXPP 1343
G PP PP
Sbjct: 178 APGGDAPPGEAGPKGPP 194
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 7.5
Identities = 19/73 (26%), Positives = 21/73 (28%), Gaps = 4/73 (5%)
Frame = +3
Query: 1137 GFPXXPPPXXXXKXXPXXXGG----XPXGXXXPXXPXXXPXPPXPPXXXNLXXSPWXXGX 1304
G P PPP + P GG P G P P P P + P
Sbjct: 322 GMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRP 381
Query: 1305 XXPPXXXXGXXPP 1343
PP PP
Sbjct: 382 PAPPSGHGMIPPP 394
>Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical
protein R53.3a protein.
Length = 543
Score = 28.7 bits (61), Expect = 9.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 504 HVCCSLVPVCCHLCWKS 454
H+ CSL P CHLC KS
Sbjct: 179 HIHCSLKPFRCHLCPKS 195
>S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein.
Length = 581
Score = 28.7 bits (61), Expect = 9.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 504 HVCCSLVPVCCHLCWKS 454
H+ CSL P CHLC KS
Sbjct: 179 HIHCSLKPFRCHLCPKS 195
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.7 bits (61), Expect = 9.9
Identities = 19/67 (28%), Positives = 20/67 (29%)
Frame = -3
Query: 1342 GGXXPXXXXGGXXXPXXXGEXXRXXXXGGXGGXGXXXGXXGXXXPXGXPPXXWGXXFXXX 1163
GG GG G GG GG G G G P G +G
Sbjct: 181 GGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGGYGGGGDGGYGPSGGYGGGYGPGGGYG 240
Query: 1162 XGGGXXG 1142
GGG G
Sbjct: 241 MGGGGGG 247
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,735,340
Number of Sequences: 27780
Number of extensions: 388984
Number of successful extensions: 1008
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3777624114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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