Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E09
         (1232 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    69   1e-12
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    37   0.007
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    32   0.14 
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    29   1.3  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    28   2.3  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    27   5.3  
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple...    27   7.1  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 68.9 bits (161), Expect = 1e-12
 Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 1/216 (0%)
 Frame = +3

Query: 339 VVLVDGVRTPFLVSFTDYARMMPHELARHALLGLLQKTGISKDVIDYIVYGTVIQEVKTS 518
           V +V  VRTP       +A +   +L   A+ G L++  I    +D +  G V+      
Sbjct: 6   VYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANLGQ 65

Query: 519 NIGREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFMSDVPI 698
           N  R+ AL AG        TV   C S  +A   G   I  G  +++VAGG E MS+ P 
Sbjct: 66  NPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNAPY 125

Query: 699 RHSRKMRSLLLRINRAKTPAQRLSLIASIRPDFFAPELPAVAEFSSGETMGHSADRLAAA 878
              +         NR       + L+  +  D        +++   G  MG++A+  A  
Sbjct: 126 YAPK---------NRFGAKYGNVELVDGLLRD-------GLSDAYDGLPMGNAAELCAEE 169

Query: 879 FGASRLEQDQYALGSHTLXHEXQ-XKGYFTDLIPVK 983
               R  QD +A+ S+      Q  K +  +++PV+
Sbjct: 170 HSIDRASQDAFAISSYKRAQNAQATKAFEQEIVPVE 205


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 573 HTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVE-FMSDVPIRHSRKMRSLLLRINRAK 749
           HT T AC +   AI      I  G  DVI+AGG E  ++ + +    K RSL  + N   
Sbjct: 164 HTTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCINPLTVAGFSKARSLSTKFNDNP 223

Query: 750 TPAQR 764
             A R
Sbjct: 224 KAASR 228


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +3

Query: 213 AKSLIKANHVRSTVKFDTARRALSVAPV---LQQKKSLPDRTGKNVVLVDGVRTPFLVSF 383
           +K+L+  +H+  TVK DT RR + V+ V   L Q     D + K+  L  G+   F  + 
Sbjct: 92  SKALLNNSHIYHTVKHDTKRRGIDVSGVSVNLSQMMKAKDDSVKS--LTSGIEYLFKKNK 149

Query: 384 TDYAR 398
            +YA+
Sbjct: 150 VEYAK 154


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = -2

Query: 370 NGVRTPSTRTTFLPVR--SGRDFFCCSTGATLSARRAVSNLTVDRT 239
           NGVR+P++  T  P+R  SG  +   S+ +  SA+R+VS  +++ T
Sbjct: 475 NGVRSPTSSPTGSPIRRTSGNRWSSGSSHSKKSAQRSVSMSSLNNT 520


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +2

Query: 458 IEGCH*LHCIWHRDPRGENLKYRARGS 538
           +E CH LH I HRD + ENL   A GS
Sbjct: 121 LEYCHKLH-ICHRDLKPENLYLDAHGS 146


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
 Frame = +3

Query: 438 LLQKTGISKDVIDYIVYGTVIQE-----VKTSNIGREAALAAGFSDRTP--AHTVTMACI 596
           LL K  +S        Y TV  E     + T+   +EAA AAG ++ T   A +VT A  
Sbjct: 27  LLNKRDVSVVTSKVYAYTTVTLEAAASAISTNGAAKEAATAAGDAETTSSVAASVTPAAS 86

Query: 597 SSNQAITTGIGMIAAGA 647
           SS  A  T +   +  A
Sbjct: 87  SSVAASVTPVASSSVAA 103


>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
           subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 480 CSQ*HPSIYQSFVGDQE 430
           C Q HP IYQ  VG+ E
Sbjct: 243 CFQKHPEIYQDMVGESE 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,125,236
Number of Sequences: 5004
Number of extensions: 80702
Number of successful extensions: 210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)