Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_E09
(1232 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 63 5e-10
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 59 6e-09
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 56 4e-08
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 53 4e-07
05_07_0133 - 27908427-27908555,27908705-27908827,27908915-279090... 36 0.087
04_04_0021 - 22192869-22192936,22193232-22193298,22193484-221935... 35 0.11
02_01_0725 - 5422477-5422641,5422721-5422792,5422876-5422958,542... 35 0.15
02_05_0440 - 29035974-29036356,29037977-29038133,29038260-290388... 33 0.35
07_03_1269 - 25339970-25340086,25340357-25340416,25341494-253415... 33 0.46
06_01_0673 - 4908496-4908563,4908646-4908712,4908821-4908922,490... 32 0.81
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 32 0.81
02_05_1006 + 33448476-33448915,33449016-33449083,33449681-334497... 31 1.9
03_03_0048 + 14065317-14065433,14065646-14065726,14066566-140669... 31 2.5
02_01_0024 + 159595-159801,159892-160017,160201-160338,160431-16... 31 2.5
07_03_1257 - 25241194-25242018 30 3.3
05_01_0512 - 4259162-4259849,4260209-4260432,4260854-4261071,426... 30 4.3
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 29 5.7
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 29 5.7
09_06_0281 + 22014394-22015534,22016041-22017056 29 7.5
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 29 7.5
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 29 7.5
01_03_0302 + 14790674-14791354 29 7.5
12_02_0152 - 14477844-14478085,14478201-14478285 29 9.9
12_01_0918 + 9072774-9072863,9073385-9073539,9073834-9074213,907... 29 9.9
11_01_0655 + 5294905-5296083 29 9.9
02_05_0358 + 28264928-28266049 29 9.9
01_06_0019 + 25620966-25621580 29 9.9
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 62.9 bits (146), Expect = 5e-10
Identities = 35/121 (28%), Positives = 56/121 (46%)
Frame = +3
Query: 333 KNVVLVDGVRTPFLVSFTDYARMMPHELARHALLGLLQKTGISKDVIDYIVYGTVIQEVK 512
++V +V RTP + + +L A+ L++ + ++ + G V+
Sbjct: 15 RDVCIVGVARTPIGALLGSLSSLPATKLGSVAIQAALRRANVEPALVQEVFMGNVLSANL 74
Query: 513 TSNIGREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFMSDV 692
R+AAL AG D P TV C S +A+ I G +DV+VAGG+E MS+
Sbjct: 75 GQAPARQAALGAGLPDTVPCTTVNKVCSSGMKAVMLAAQTIQLGMHDVVVAGGMESMSNA 134
Query: 693 P 695
P
Sbjct: 135 P 135
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 59.3 bits (137), Expect = 6e-09
Identities = 64/218 (29%), Positives = 93/218 (42%), Gaps = 3/218 (1%)
Frame = +3
Query: 336 NVVLVDGVRTPFLVSFTDYARMMPHE-LARHALLGLLQKTGISKDVIDYIVYGTVIQEVK 512
+VV+V RT S + P E L L+ KT ++ + IV GTV+
Sbjct: 50 DVVIVAAYRTAICKSKRGGFKDTPAEDLLVPVFKALIDKTKLNPSEVGDIVVGTVLAPGS 109
Query: 513 TSNIG-REAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFMSD 689
I R AA AGF D P TV C S QA+ I AG YD+ +A G+E M+
Sbjct: 110 QRAIECRMAAFYAGFPDTVPLMTVNRQCSSGLQAVANVASNIKAGLYDIGIAAGLESMTV 169
Query: 690 VPIRHSRKMRSLLLRINRAKTPAQRLSLIASIRPDFFAPELPAVAEFSSGETMGHSADRL 869
+ R++ P ++ L + R D P MG +++ +
Sbjct: 170 NQV-----------RLDGQVNP--KVELFSQAR-DCLLP-------------MGLTSENV 202
Query: 870 AAAFGASRLEQDQYALGSHTLXHEXQXKGYF-TDLIPV 980
A FG +R+EQDQ A+ SH G F +++PV
Sbjct: 203 AKRFGITRMEQDQAAVESHRKAAAAAASGKFKEEIVPV 240
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 56.4 bits (130), Expect = 4e-08
Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Frame = +3
Query: 330 GKNVVLVDGVRTPFLVSFTD-YARMMPHELARHALLGLLQKTGISKDVIDYIVYGTVIQE 506
G +VV+V RTP + + P +L L +L T I+ I IV GTV+
Sbjct: 46 GDDVVVVAAYRTPICKAKRGGFKDTYPEDLLTVVLKAVLDNTKINPGEIGDIVVGTVLGP 105
Query: 507 VKTSNIG-REAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFM 683
I R AA AG + P TV C S QA+ I AG YD+ + G+E M
Sbjct: 106 GSQRAIECRAAAFYAGVPENVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM 165
Query: 684 S 686
S
Sbjct: 166 S 166
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 53.2 bits (122), Expect = 4e-07
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 3/134 (2%)
Frame = +3
Query: 321 DRTGKNVVLVDGV-RTPFLVSFTDYARMMPHELARHALLGLLQKTGISKDVIDYIVYGTV 497
D G V V GV RTP + + +L A+ L++ + ++ + +G V
Sbjct: 4 DNIGSRDVCVVGVARTPMGGFLGALSSLSATKLGSIAIEAALKRANVDPALVQEVFFGNV 63
Query: 498 IQEVKTSNIGREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVE 677
+ R+AAL AG + V C S +A I G D++VAGG+E
Sbjct: 64 LSANLGQAPARQAALGAGIPNTVVCSAVNKVCASGMKATMFAAQSILLGINDIVVAGGME 123
Query: 678 FMSDVP--IRHSRK 713
MS+ P I +RK
Sbjct: 124 SMSNAPKYIAEARK 137
>05_07_0133 -
27908427-27908555,27908705-27908827,27908915-27909022,
27909109-27909198,27909304-27909363,27909454-27909516,
27909604-27909678,27910337-27910402,27910607-27910786
Length = 297
Score = 35.5 bits (78), Expect = 0.087
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 609 AITTGIGMIAAGAYDVIVAGGVEFMSDVPIRHSRKMRSLLLRINRAKTPAQRLSLIASIR 788
A+ G MI G YD G+EF S+ ++ +++ R +L I + T LSL+ +R
Sbjct: 121 AVEAGAKMIEIGNYDSFYDTGIEFSSEKILKLTKETREMLPDITLSVTVPHTLSLLDQVR 180
>04_04_0021 -
22192869-22192936,22193232-22193298,22193484-22193585,
22193694-22193807,22194156-22194329,22194835-22195266,
22196328-22196759
Length = 462
Score = 35.1 bits (77), Expect = 0.11
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +3
Query: 537 ALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVE 677
A+ AGF P ++++ AC +SN I G DVIVAGG E
Sbjct: 197 AMDAGFMG--PNYSISTACATSNYCFYAAANHIRRGEADVIVAGGTE 241
>02_01_0725 -
5422477-5422641,5422721-5422792,5422876-5422958,
5423113-5423173,5423305-5423381,5423456-5423522,
5423770-5423803,5423894-5423974,5424285-5424436,
5424529-5424615,5425019-5425126,5425906-5426259
Length = 446
Score = 34.7 bits (76), Expect = 0.15
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 567 PAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFMSD-VPIRHSRKMRSLLLRINR 743
P H AC + +I MI G DV+VAGG E D + I ++R+L + N
Sbjct: 185 PNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSIAGFSRLRALSTKYNS 244
Query: 744 AKTPAQR 764
A R
Sbjct: 245 LPQAASR 251
>02_05_0440 -
29035974-29036356,29037977-29038133,29038260-29038824,
29038866-29039191
Length = 476
Score = 33.5 bits (73), Expect = 0.35
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +1
Query: 670 EWS-SCRTCPSATPARCALCCCG-STAPR-PRRRGCRSLHPYDRTSSLQSCRPWPSSLRA 840
+W S R P C+ C G STA + P GCRS+ TSS ++ R +S +
Sbjct: 42 QWRISARRNPLPRQFPCSRCPTGPSTACQTPPSGGCRSIST--ATSSCRTPRAPAASGSS 99
Query: 841 RPWATARTGWRPPSEP 888
ATART W P P
Sbjct: 100 SSAATARTRWMPTDPP 115
>07_03_1269 -
25339970-25340086,25340357-25340416,25341494-25341574,
25341647-25341801,25341894-25341978,25342106-25342174,
25342410-25342489,25342620-25342665,25342743-25342838,
25342921-25343031,25343141-25343344,25343430-25343632,
25344495-25344711
Length = 507
Score = 33.1 bits (72), Expect = 0.46
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +3
Query: 513 TSNIGREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFMSDV 692
T+N+G A LA P ++++ AC +SN I I G DV++ GG SD
Sbjct: 233 TTNMG-SAILAMDLGWMGPNYSISTACATSNFCILNAANHIRRGEADVMLCGG----SDA 287
Query: 693 PI 698
P+
Sbjct: 288 PL 289
>06_01_0673 -
4908496-4908563,4908646-4908712,4908821-4908922,
4909006-4909119,4909510-4909683,4909769-4910200,
4910855-4911295
Length = 465
Score = 32.3 bits (70), Expect = 0.81
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 516 SNIGREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVE 677
+N+G A L P ++++ AC +SN I G DV++AGG E
Sbjct: 192 TNMG-SALLGMDIGFMGPNYSISTACATSNYCFYAAANHIRRGEADVMIAGGTE 244
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 32.3 bits (70), Expect = 0.81
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Frame = +2
Query: 692 AHPPLPQDALS---AAADQPRQDPGAEA-VAHCIHTTXXXXXXXXXXXXVLFGRDHGPQR 859
A P P +A A ADQ P +A V H +H LFGRDH P
Sbjct: 105 AAEPAPSEAAPPPPAEADQAAAPPATDATVIHMVHDYPYTHDHHHGHGHHLFGRDHWPAS 164
Query: 860 GQAGGRLRSLATGAGPVRAGLAHARPRGP 946
G + + GA P A +++ P
Sbjct: 165 HHPAGGMVNYGGGA-PYYAAHSYSHRASP 192
>02_05_1006 +
33448476-33448915,33449016-33449083,33449681-33449751,
33449905-33450156,33450473-33450636,33450731-33450773,
33451044-33451161,33451384-33451481,33451550-33451594
Length = 432
Score = 31.1 bits (67), Expect = 1.9
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 676 SSCRTCPSATPARCALCCC-GSTAPRPRRRGCRSLHPYDRTSSLQSCRPWPSSLRARPWA 852
+S R PS+ A C+L ST+ PRRRG R P S P P R+R
Sbjct: 3 ASSRLNPSS--ATCSLAAASASTSASPRRRG-RGRRPASAMGQAPSSPPGPGRSRSR--- 56
Query: 853 TARTGWRPPSEP 888
+ W PP P
Sbjct: 57 -GISRWPPPPPP 67
>03_03_0048 +
14065317-14065433,14065646-14065726,14066566-14066967,
14067131-14067199,14067278-14067360,14067503-14067555,
14067659-14067780,14068033-14068386,14068479-14068578,
14068663-14068895
Length = 537
Score = 30.7 bits (66), Expect = 2.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 691 CPSATPARCALCCCGSTAPRPRRRGCRSLHP 783
C S TP +L C TAPRP R + P
Sbjct: 164 CSSPTPRAASLACAAPTAPRPSSRTTTTAPP 194
>02_01_0024 +
159595-159801,159892-160017,160201-160338,160431-160526,
160958-161200,161249-161537,161612-161781,161975-162052,
162156-162227,162345-162449,162555-162647,162737-162829,
163109-163235,163317-163330
Length = 616
Score = 30.7 bits (66), Expect = 2.5
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +3
Query: 438 LLQKTGISKDVIDYIVYGTVIQ-EVKTSNIGREAAL-AAGFSDRTPAHTVTMACISSNQA 611
L K G K V D + ++ E NIG + AA ++ T + + +
Sbjct: 92 LESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGM 151
Query: 612 ITTGIGMIAAGAYDVIVAGGVEFMSDVPIRHSRKM 716
IT G+ ++AAGA V + G+E + + +KM
Sbjct: 152 ITEGVKVVAAGANPVQITRGIEKTAKALVSELQKM 186
>07_03_1257 - 25241194-25242018
Length = 274
Score = 30.3 bits (65), Expect = 3.3
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 697 SATPARCALCCCGSTAPR---PRRRGCRSLHPYDRTSSLQSCRPWPSSLRARP 846
S TP+RC +T R PRR R HP RT++ + +P P L +P
Sbjct: 67 SMTPSRCRTTLASTTTTRRRPPRRLHSRPRHPRGRTTASTTPQP-PRPLPRQP 118
>05_01_0512 -
4259162-4259849,4260209-4260432,4260854-4261071,
4261154-4261234,4261342-4262299
Length = 722
Score = 29.9 bits (64), Expect = 4.3
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +3
Query: 489 GTVIQEVKTSNIGREAALAAGFSDRTPAHTVTMACISSNQAI-TTG 623
GT ++ S I E++L+ +D++P+H+ +MA S +QA+ +TG
Sbjct: 49 GTALRRYAESEISTESSLSISEADKSPSHS-SMASPSPSQALESTG 93
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +1
Query: 706 PARCALCCCGSTAPRPRR--RGCRS 774
P CAL CCGS+AP R R C S
Sbjct: 123 PLPCALACCGSSAPSVVRHLRACGS 147
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 29.5 bits (63), Expect = 5.7
Identities = 22/80 (27%), Positives = 33/80 (41%)
Frame = +1
Query: 646 RMTSSWRAEWSSCRTCPSATPARCALCCCGSTAPRPRRRGCRSLHPYDRTSSLQSCRPWP 825
R S R E+ C TC RC+ C + R C+ +H R Q+C+ W
Sbjct: 20 RSAPSARPEYHECATCHGPAKTRCSRC----KSVRYCSGKCQIIH--WRQGHKQTCQQW- 72
Query: 826 SSLRARPWATARTGWRPPSE 885
+ T+ +G PP+E
Sbjct: 73 -----NGFGTSSSGGLPPTE 87
>09_06_0281 + 22014394-22015534,22016041-22017056
Length = 718
Score = 29.1 bits (62), Expect = 7.5
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 591 CISSNQAITTGIGMIAAGAYDVIVAGGVEFMS-DVPIRHSRKMRSLLLRINRAKTPAQRL 767
C+ +N ++ GIG + +GA +++ G F+ V + +R +R + NR Q +
Sbjct: 375 CVKTNLGLSVGIG-VGSGAGLLVMGLGAAFLKRKVKKQRARMLRQKFFKQNRGHLLQQLV 433
Query: 768 SLIASIRPDFFAP 806
S A I P
Sbjct: 434 SQKADIAERMIIP 446
>07_03_0627 -
20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 29.1 bits (62), Expect = 7.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 543 PGLPRALYLRFSPLGSRCHIQCSQ*HPSIY 454
P LP Y RF+P+ RC ++ + P+++
Sbjct: 851 PMLPEMQYFRFNPVDERCGMELDETDPAVW 880
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 29.1 bits (62), Expect = 7.5
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 661 WRAEWSSCRTCPSATPARCALCCCGSTAPRPRRRGCRSLHP 783
W S+ RT + TP +LCC G T G RSL P
Sbjct: 426 WHQSTSATRTNSAVTPRALSLCCSGQTP-----TGSRSLVP 461
>01_03_0302 + 14790674-14791354
Length = 226
Score = 29.1 bits (62), Expect = 7.5
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 640 PARMTSSWRAEWSSCRTCPSATPARCALCCCGSTAPRPRR-RGCRSLHPYD 789
PA++T R +WS C+ PAR ++ P+P++ RGC HP +
Sbjct: 42 PAKITGD-RQKWSMCKNQCRKQPARRYPAAPMTSLPQPKKGRGC-PRHPLE 90
>12_02_0152 - 14477844-14478085,14478201-14478285
Length = 108
Score = 28.7 bits (61), Expect = 9.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 682 CRTCPSATPARCALCCCGST 741
CR C A P+ C L C ST
Sbjct: 71 CRCCSKANPSNCQLTSCSST 90
>12_01_0918 +
9072774-9072863,9073385-9073539,9073834-9074213,
9074299-9075273,9076001-9076134
Length = 577
Score = 28.7 bits (61), Expect = 9.9
Identities = 17/75 (22%), Positives = 33/75 (44%)
Frame = -1
Query: 767 QPLRRGLGAVDPQQQRAHLAGVADGHVRHELHSARHDDVIRAGRYHTDTSGDCLVRRDAS 588
+P + + V P Q L + R+ + ++ +D I G +DT+ +++ +
Sbjct: 254 KPYKTDVVVVSPGQTVDALMVASAAVGRYYMAASPYDSAIPQGPPFSDTTATAILQYAGA 313
Query: 587 HGDSVRWSPVAEPSR 543
+VRW P P R
Sbjct: 314 RRKTVRWRPPVLPRR 328
>11_01_0655 + 5294905-5296083
Length = 392
Score = 28.7 bits (61), Expect = 9.9
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +3
Query: 357 VRTPFLVSFTDYARMMPHELARHALLGLLQKTGISKDVIDY 479
V P+++ ++ RM+P RH+++ +L+ G+ KD +D+
Sbjct: 312 VERPWVLGYSLEKRMVP----RHSVMKILRTMGLMKDAVDF 348
>02_05_0358 + 28264928-28266049
Length = 373
Score = 28.7 bits (61), Expect = 9.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 695 HPPLPQDALSAAADQPRQDP 754
HPPLP A +AA++ +QDP
Sbjct: 198 HPPLPTAAAAAASNAAQQDP 217
>01_06_0019 + 25620966-25621580
Length = 204
Score = 28.7 bits (61), Expect = 9.9
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +1
Query: 664 RAEWSSCRTCPSATPARC-ALCCC 732
R+ SC TC ++ A C ALCCC
Sbjct: 22 RSAAQSCGTCGASAVASCVALCCC 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,520,283
Number of Sequences: 37544
Number of extensions: 645456
Number of successful extensions: 2431
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2426
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3794526552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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