Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_E09
(1232 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical pr... 254 9e-68
U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical pr... 74 2e-13
Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical p... 62 1e-09
U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa ... 60 4e-09
AF098999-6|AAC68724.2| 787|Caenorhabditis elegans Half transpor... 29 8.9
>M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical
protein B0303.3 protein.
Length = 448
Score = 254 bits (622), Expect = 9e-68
Identities = 131/244 (53%), Positives = 172/244 (70%)
Frame = +3
Query: 249 TVKFDTARRALSVAPVLQQKKSLPDRTGKNVVLVDGVRTPFLVSFTDYARMMPHELARHA 428
+ F TAR A +VA KK++P N+VLVD VRTPF+VS T + +M +L + A
Sbjct: 6 STSFGTARAASAVA-----KKNMP-----NIVLVDAVRTPFVVSGTVFKDLMAVDLQKEA 55
Query: 429 LLGLLQKTGISKDVIDYIVYGTVIQEVKTSNIGREAALAAGFSDRTPAHTVTMACISSNQ 608
+ L++KT + + +D+I+ GTVIQE KTSNI REAAL AG D+ PAHTVT+ACISSN
Sbjct: 56 IKALVEKTKLPYEQLDHIICGTVIQECKTSNIAREAALLAGVPDKIPAHTVTLACISSNV 115
Query: 609 AITTGIGMIAAGAYDVIVAGGVEFMSDVPIRHSRKMRSLLLRINRAKTPAQRLSLIASIR 788
A+TTG+GM+A G + I+AGGVE +SDVPIR++R R +L +N+AK +L + I
Sbjct: 116 AMTTGMGMLATGNANAIIAGGVELLSDVPIRYNRNARKAMLGMNKAKDVPSKLKIGGQIV 175
Query: 789 PDFFAPELPAVAEFSSGETMGHSADRLAAAFGASRLEQDQYALGSHTLXHEXQXKGYFTD 968
+ +PELPAVAEFS+GETMGHS DRLAAAF SR EQD++A+ SHTL E G FTD
Sbjct: 176 KNLLSPELPAVAEFSTGETMGHSGDRLAAAFNVSRREQDEFAIRSHTLASEAAKNGKFTD 235
Query: 969 LIPV 980
++PV
Sbjct: 236 VVPV 239
>U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical
protein T02G5.7 protein.
Length = 390
Score = 74.1 bits (174), Expect = 2e-13
Identities = 55/198 (27%), Positives = 88/198 (44%)
Frame = +3
Query: 333 KNVVLVDGVRTPFLVSFTDYARMMPHELARHALLGLLQKTGISKDVIDYIVYGTVIQEVK 512
K V ++ G RTP +A EL A ++++G++ + I+ ++ G V+
Sbjct: 4 KKVFILSGARTPIGAYRGSFANFGAVELGTVAAKAAIERSGVAPEKIEEVIGGCVLPAGL 63
Query: 513 TSNIGREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFMSDV 692
N+ R+ +L+AG T A TV C SS +A+ T I AG YD I+ G E MS V
Sbjct: 64 GQNVTRQISLSAGLPVTTQAVTVNKVCSSSMKALVTAAVEIKAGYYDTILVVGTENMSQV 123
Query: 693 PIRHSRKMRSLLLRINRAKTPAQRLSLIASIRPDFFAPELPAVAEFSSGETMGHSADRLA 872
P + R + P + + I D + + MG A++
Sbjct: 124 PFY-----------VPRGEIPFGGIQMTDGISKD-------GLEDIKEKGPMGLCAEKTV 165
Query: 873 AAFGASRLEQDQYALGSH 926
+G +R EQD YA+ S+
Sbjct: 166 KDYGITREEQDAYAIESY 183
>Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical
protein F53A2.7 protein.
Length = 394
Score = 61.7 bits (143), Expect = 1e-09
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 1/216 (0%)
Frame = +3
Query: 330 GKNVVLVDGVRTPFLVSFTDYARMMPHELARHALLGLLQKTGISKDVIDYIVYGTVIQEV 509
GK V +V RT F + +L A L+ + D +D++++G V+
Sbjct: 3 GKCVFIVGAKRTAFGTFGGKLKGLSATDLGVVASQAALKHANVGADAVDHVIFGNVVASS 62
Query: 510 KTS-NIGREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFMS 686
+ + R L +G A TV C S QA+ I G ++++AGG E MS
Sbjct: 63 RDGIYLSRHIGLKSGVPQNVGALTVNRLCGSGFQAVVNAAQAIKLGESNIVLAGGTENMS 122
Query: 687 DVPIRHSRKMRSLLLRINRAKTPAQRLSLIASIRPDFFAPELPAVAEFSSGETMGHSADR 866
VP +R + R + +F ++++ + MG +A++
Sbjct: 123 MVPF----AVRDI------------RFGTALGKKYEFEDMLWDSLSDPYAKLAMGQTAEK 166
Query: 867 LAAAFGASRLEQDQYALGSHTLXHEXQXKGYFTDLI 974
L A + +R E D++AL S TL + Q G + + I
Sbjct: 167 LGAQYKVTRQEADEFALRSQTLWKKAQEAGVYKNEI 202
>U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa
thiolase protein 1 protein.
Length = 407
Score = 59.7 bits (138), Expect = 4e-09
Identities = 51/200 (25%), Positives = 78/200 (39%)
Frame = +3
Query: 327 TGKNVVLVDGVRTPFLVSFTDYARMMPHELARHALLGLLQKTGISKDVIDYIVYGTVIQE 506
+ K+ +V RTP + + + ELA A+ L++ + I + G V Q
Sbjct: 20 SNKHAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEVFLGQVCQA 79
Query: 507 VKTSNIGREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFMS 686
R+AAL AG TV C S +AI I G D + GG+E MS
Sbjct: 80 NAGQAPARQAALGAGLDLSVAVTTVNKVCSSGLKAIILAAQQIQTGHQDFAIGGGMESMS 139
Query: 687 DVPIRHSRKMRSLLLRINRAKTPAQRLSLIASIRPDFFAPELPAVAEFSSGETMGHSADR 866
VP + R + P +I I D V MG+ ++
Sbjct: 140 QVP-----------FYVQRGEIPYGGFQVIDGIVKDGLTDAYDKV-------HMGNCGEK 181
Query: 867 LAAAFGASRLEQDQYALGSH 926
+ G +R +QD+YA+ S+
Sbjct: 182 TSKEMGITRKDQDEYAINSY 201
>AF098999-6|AAC68724.2| 787|Caenorhabditis elegans Half transporter
(pgp related)protein 4 protein.
Length = 787
Score = 28.7 bits (61), Expect = 8.9
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 330 GKNVVLVDGVRTPFLVSFTDYARMMPHELAR--HALLGLLQKTGISKDVIDYI 482
G ++VL ++ LVSF Y + L + GL+Q G S+ V +YI
Sbjct: 425 GGHLVLTQKMKGDLLVSFLLYQMQLGDNLRQMGEVWTGLMQSVGASRKVFEYI 477
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,305,618
Number of Sequences: 27780
Number of extensions: 483151
Number of successful extensions: 1371
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3412067766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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