Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_E08
(1346 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 36 0.097
03_02_0484 + 8805053-8805538 36 0.097
03_02_0483 - 8804021-8804485 36 0.097
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 36 0.097
01_01_0229 - 1943473-1943922 36 0.097
03_02_0478 + 8775892-8776377 35 0.13
01_01_0231 + 1951047-1951499 35 0.17
11_02_0041 - 7669692-7670312 34 0.29
01_01_0227 + 1933247-1933699 34 0.29
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 33 0.68
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830 31 1.6
02_05_0494 + 29486960-29487454 29 6.3
04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317... 29 8.4
01_01_0599 - 4448290-4448790 29 8.4
01_01_0228 + 1940149-1940649 29 8.4
>03_02_0485 - 8808139-8808618
Length = 159
Score = 35.5 bits (78), Expect = 0.097
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +1
Query: 538 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 642
S +F+RR+ LP+ P+ +++ + +GVLTVT PK
Sbjct: 111 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPK 144
>03_02_0484 + 8805053-8805538
Length = 161
Score = 35.5 bits (78), Expect = 0.097
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +1
Query: 538 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 642
S +F+RR+ LP+ P+ +++ + +GVLTVT PK
Sbjct: 113 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPK 146
>03_02_0483 - 8804021-8804485
Length = 154
Score = 35.5 bits (78), Expect = 0.097
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +1
Query: 538 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 642
S +F+RR+ LP+ P+ +++ + +GVLTVT PK
Sbjct: 106 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPK 139
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 35.5 bits (78), Expect = 0.097
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 538 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 642
S QF+RR+ LP+ D V++ L +GVLTVT PK
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 35.5 bits (78), Expect = 0.097
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 538 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 642
S QF+RR+ LP+ D V++ + +GVLTVT PK
Sbjct: 101 SGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVPK 134
>03_02_0478 + 8775892-8776377
Length = 161
Score = 35.1 bits (77), Expect = 0.13
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +1
Query: 538 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 642
S +F+RR+ LP P+ +++ + + GVLTVT PK
Sbjct: 113 SGKFLRRFRLPDNAKPEQIKASMEN-GVLTVTVPK 146
>01_01_0231 + 1951047-1951499
Length = 150
Score = 34.7 bits (76), Expect = 0.17
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 538 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 642
S QF+RR+ LP+ D V++ + +GVLTVT PK
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVPK 135
>11_02_0041 - 7669692-7670312
Length = 206
Score = 33.9 bits (74), Expect = 0.29
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 544 QFIRRYALPQGCLPDTVESKLSSDGVLTVTAPKVLALPSTGEKIVPITHTG 696
+F RR+ +P G V ++L DGVLTVT PKV ++V I G
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPKVPGHRGREPRVVAIDGAG 190
>01_01_0227 + 1933247-1933699
Length = 150
Score = 33.9 bits (74), Expect = 0.29
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +1
Query: 538 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 642
S +F RR+ LP+G D V + + +GVLTVT PK
Sbjct: 102 SGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPK 135
>09_04_0512 +
18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 32.7 bits (71), Expect = 0.68
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 318 NRKRNETDRAAGFGDESNGASGDGL*NHIQRREVSG-QYRRTTFFTG*NKC 467
+R+RN DR + +NG S DGL + ++R +++G + RTT + C
Sbjct: 148 SRQRNIEDRLRERDEAANGGSSDGLQDRMERSKIAGVRLNRTTTSSSSEPC 198
>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
Length = 763
Score = 31.5 bits (68), Expect = 1.6
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 214 NQSMHRDRYRMSPFNQFRDVVEPQFYRPWENT 309
++SMHRDRY P +FR E R WEN+
Sbjct: 117 HRSMHRDRYERQPSGRFRQWPE----RQWENS 144
>02_05_0494 + 29486960-29487454
Length = 164
Score = 29.5 bits (63), Expect = 6.3
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 541 RQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 642
R + ++ LP+ D ++++ DGVLTVT PK
Sbjct: 106 RAAVTQFRLPEDAAADEASARMA-DGVLTVTVPK 138
>04_04_0939 -
29530242-29531087,29531406-29531597,29531690-29531770,
29532300-29532428,29532579-29532650,29532761-29532829,
29533809-29533891,29534101-29534203,29534289-29534402,
29536230-29536274
Length = 577
Score = 29.1 bits (62), Expect = 8.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 98 RTNKKRCQFCHTCTIWRDHFV*WIENSSARR 190
R N K C+ C C DH W+ N R+
Sbjct: 117 RKNSKHCRSCDKCVDGFDHHCRWLNNCVGRK 147
>01_01_0599 - 4448290-4448790
Length = 166
Score = 29.1 bits (62), Expect = 8.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 544 QFIRRYALPQGCLPDTVESKLSSDGVLTVTAPKV 645
+F+R++ LP D + S + DGVLTVT K+
Sbjct: 118 KFMRKFVLPDNADVDKI-SAVCQDGVLTVTVEKL 150
>01_01_0228 + 1940149-1940649
Length = 166
Score = 29.1 bits (62), Expect = 8.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 547 FIRRYALPQGCLPDTVESKLSSDGVLTVTAPKVL 648
F R+ LP + D V + + G+LTVT PKV+
Sbjct: 104 FFGRFHLPDDAVVDLVRASMDG-GMLTVTVPKVV 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,920,747
Number of Sequences: 37544
Number of extensions: 467973
Number of successful extensions: 1234
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4236833328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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