Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_E07
(1347 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.12
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 0.26
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.36
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 31 0.48
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 28 2.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 5.9
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 27 5.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 5.9
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.12
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 1186 PXGGPPPXXXGAPPPPPPPXXXXXXPXXXP 1097
P P P G PPPPPPP P P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 32.3 bits (70), Expect = 0.16
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -3
Query: 1186 PXGGPPPXXXGAPPPPPPP 1130
P PPP GA PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780
Score = 31.1 bits (67), Expect = 0.36
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = -3
Query: 1174 PPPXXXGAPPPPPPPXXXXXXPXXXPXGEKXXFXPXGGXXXXXXPXXAPPP 1022
PP G PPPPPPP P G P P P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 27.9 bits (59), Expect = 3.4
Identities = 16/57 (28%), Positives = 16/57 (28%)
Frame = -3
Query: 1174 PPPXXXGAPPPPPPPXXXXXXPXXXPXGEKXXFXPXGGXXXXXXPXXAPPPXAXXGG 1004
PPP P P P P G P G P PPP GG
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/57 (28%), Positives = 16/57 (28%)
Frame = -3
Query: 1174 PPPXXXGAPPPPPPPXXXXXXPXXXPXGEKXXFXPXGGXXXXXXPXXAPPPXAXXGG 1004
PPP P P P P G P G P PPP A G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 1186 PXGGPPPXXXGAPPPPPPP 1130
P PPP PPPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPP 766
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect(2) = 0.26
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3
Query: 1171 PPXXXGAPPPPPP 1133
PP APPPPPP
Sbjct: 354 PPQGRSAPPPPPP 366
Score = 23.0 bits (47), Expect(2) = 0.26
Identities = 12/42 (28%), Positives = 12/42 (28%)
Frame = -3
Query: 1150 PPPPPPPXXXXXXPXXXPXGEKXXFXPXGGXXXXXXPXXAPP 1025
PP PPP P P G P APP
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 31.1 bits (67), Expect = 0.36
Identities = 20/59 (33%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Frame = +3
Query: 1005 PPXXAXGGGAFXGXXXXXXPPXGXXXF-FSPXGXXXGXXXXXXGGGGGGGAPXXXGGGP 1178
PP G G F G G F P G G G GG GG GGGP
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGP 258
Score = 30.3 bits (65), Expect = 0.64
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +3
Query: 1026 GGAFXGXXXXXXPPXGXXXFFSPXGXXXGXXXXXXGGGGGGGAPXXXGGGP 1178
GG F G P F G G G GG GG P GGP
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP 237
Score = 29.1 bits (62), Expect = 1.5
Identities = 27/80 (33%), Positives = 27/80 (33%), Gaps = 5/80 (6%)
Frame = +3
Query: 249 GXGXXPXGGGXGAPP----XXXSFVXXGAPPXXXGGKKGXFWGXXGXXXFXGPPXG-GGX 413
G G GGG G PP F G GG G F G G F G P G GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGG-HGGFGG--GPGGFEGGPGGFGGG 243
Query: 414 XXXXXXXXXFFFSGXGGXXG 473
F G GG G
Sbjct: 244 PGGFGGGLGGFGGGPGGFGG 263
Score = 29.1 bits (62), Expect = 1.5
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Frame = +3
Query: 1023 GGGAFXGXXXXXXP-PXGXXXF--FSPXGXXXGXXXXXXGGGGG-GGAPXXXGGGP 1178
G G F G P P G F F G G GG GG G P GGGP
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244
Score = 27.9 bits (59), Expect = 3.4
Identities = 24/69 (34%), Positives = 24/69 (34%)
Frame = +1
Query: 1006 PPXXPGGGGXFXGXFXXXXPPXGKXXFFPRGXXXXXXXXXXXGGVGGGGPXXXGGGAPPX 1185
PP PGG G F G F G F G GG GGG P GGG
Sbjct: 200 PPPGPGGFGGFGG-FGGEGHHHGGHGGFGGGPGGFEGGP---GGFGGG-PGGFGGGLGGF 254
Query: 1186 GXXKKXFXG 1212
G F G
Sbjct: 255 GGGPGGFGG 263
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 30.7 bits (66), Expect = 0.48
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 1150 PPPPPPPXXXXXXPXXXPXGEK 1085
PPPPPPP P P G+K
Sbjct: 371 PPPPPPPELLNHSPKSRPLGDK 392
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 1178 GAPPPXXXGPPPPTPP 1131
GAPP GPPPP P
Sbjct: 418 GAPPSHTYGPPPPVQP 433
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 4.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 1288 PPPPGFXPXXKXPP 1247
PPPPGF P + PP
Sbjct: 13 PPPPGFEPPSQPPP 26
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/34 (32%), Positives = 13/34 (38%)
Frame = -3
Query: 1186 PXGGPPPXXXGAPPPPPPPXXXXXXPXXXPXGEK 1085
P PP G P PPPP P G++
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -3
Query: 1186 PXGGPPPXXXGAPPPPPPPXXXXXXPXXXP 1097
P PP AP PPPPP P P
Sbjct: 1694 PQSAAPPQM-SAPTPPPPPMSVPPPPSAPP 1722
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = -3
Query: 1174 PPPXXXGAPPPPPPPXXXXXXPXXXP 1097
PPP PPPP P P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 5.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 1174 PPPXXXGAPPPPPPP 1130
P P G+ PPPPPP
Sbjct: 347 PTPQVQGSRPPPPPP 361
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/74 (24%), Positives = 19/74 (25%)
Frame = -3
Query: 463 PPXPEKKKXXXXXXKXXXPPPXGGPXXXXXPXXPQKXPFFPPXXXGGAPXXTKXXXXGGA 284
PP P PP P P P+ PP G
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPV-PKPAAGVPPVPPPSEAPPVPKPSVGVP 1208
Query: 283 PXPPPXGXXPXPXP 242
P PPP P P P
Sbjct: 1209 PVPPPSTAPPVPTP 1222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,839
Number of Sequences: 5004
Number of extensions: 38822
Number of successful extensions: 316
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 741217394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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