Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E06
         (1290 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    29   1.4  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    28   3.2  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    28   3.2  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   9.8  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   9.8  

>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 113 SGKHWNTDNWIFLLSYCDSSQLADGAAVAIVFKNVVALKQILATGRCNVHIPTSLTGKTL 292
           SGK    D WI  LS C+     D   +  + K V++++  + + RC V +   + G+  
Sbjct: 4   SGKIGEVDRWIEQLSRCEPLSEEDVIQMCDLAKEVLSVESNVQSVRCPVTVCGDIHGQFH 63

Query: 293 D 295
           D
Sbjct: 64  D 64


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 380 LIITTRPINSRNPSQQNNTCSINS---AGRDASVSLQRSSTNTNNAVPNSPRNIL 535
           L+ ++ PI+++  S  N   S  S   + + A  + Q S  +T+N VP  P N +
Sbjct: 366 LVFSSNPISNQRLSSLNRVASFESNISSLKSALYASQNSDGSTSNPVPFVPHNFV 420


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 1007 RHRTLFQLHTKLAHPYAIENVKNSH*ARGFSFTKERIIPSPYVS 876
            R RTL +  T    PY I+  +N H    F  + E ++P+  VS
Sbjct: 239  RQRTLTEFRTMSIKPYEIQVYRNKH---WFPISTEDLLPNDVVS 279


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 455 GRDASVSLQRSSTNTNNAVPNSPRNILQQEPTLN 556
           GR++SVS   SS   N+  P S   ++ +E T N
Sbjct: 679 GRNSSVSRSSSSVEVNSKHPGSDDMLIDKEYTRN 712


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 350 HFPENEANRPLIITTRPINSRNPSQQNNTCSINSAGRDASVSLQRSSTNTNNAVPNS 520
           H P +      +++  P+N  N  +QN T +  S+ +++  S   +  N +N  PNS
Sbjct: 205 HHPPSPKQTRRVVSEGPLNGVN-YKQNTTNNRVSSFQNSQYSTLNNFQNNSNQSPNS 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,323,660
Number of Sequences: 5004
Number of extensions: 84218
Number of successful extensions: 226
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 703461012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)