Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E06
         (1290 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.          25   6.3  
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.          25   6.3  
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.          25   6.3  

>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 234 ICFNATTFLNTIATAAPSASCEESQYE 154
           +C+ A  F   +ATAA S+S E+S YE
Sbjct: 217 LCYVALDFEQEMATAASSSSLEKS-YE 242


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 234 ICFNATTFLNTIATAAPSASCEESQYE 154
           +C+ A  F   +ATAA S+S E+S YE
Sbjct: 217 LCYVALDFEQEMATAASSSSLEKS-YE 242


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 234 ICFNATTFLNTIATAAPSASCEESQYE 154
           +C+ A  F   +ATAA S+S E+S YE
Sbjct: 217 LCYVALDFEQEMATAASSSSLEKS-YE 242


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,063,381
Number of Sequences: 2352
Number of extensions: 21771
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 148375161
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)