Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E06
         (1290 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40797-8|AAL08029.1|  332|Caenorhabditis elegans Serpentine rece...    31   2.3  
Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical pr...    30   4.1  
U23519-6|ABB88230.1|  141|Caenorhabditis elegans Hypothetical pr...    30   4.1  
U89245-1|AAB49459.1|  612|Caenorhabditis elegans transcription f...    29   7.1  
AF039046-14|AAB94214.1|  388|Caenorhabditis elegans Prion-like-(...    29   7.1  
AF003141-10|AAK21487.1|  612|Caenorhabditis elegans Uncoordinate...    29   7.1  
AF001272-1|AAB84235.1|  612|Caenorhabditis elegans enhancer of s...    29   7.1  
AF001271-1|AAB84234.1|  612|Caenorhabditis elegans enhancer of s...    29   7.1  

>U40797-8|AAL08029.1|  332|Caenorhabditis elegans Serpentine
           receptor, class u protein7 protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 23/77 (29%), Positives = 34/77 (44%)
 Frame = -1

Query: 921 IFIYEGTNHTFTVCIIISNSCVLSVYLFIKIIAIITMSYFSFIKYSSPNYFMLTEF*NQW 742
           I+I   T   F        +CV++ ++FI + +  T++  SF      N F  T     W
Sbjct: 38  IYIVNYTIFVFMEQYTRKKTCVVNPHIFIVVSSAHTVNILSFFFDYMSNRFPATGMMTSW 97

Query: 741 RSVSLHVGEETLTIFCL 691
            + S H   ETL IF L
Sbjct: 98  CASSNH---ETLLIFIL 111


>Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical
           protein F09B9.1 protein.
          Length = 710

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 224 LKQILATGRCNVHIPTSLTGKTLDQLAKGYKVSNWLEAPGSSHFPEN 364
           ++ IL TGR +  +    TGKT   L K  + + W+E      F EN
Sbjct: 661 IEAILGTGRPSNKVEPIETGKTTPILEKKLEGNGWIEEVKEEKFDEN 707


>U23519-6|ABB88230.1|  141|Caenorhabditis elegans Hypothetical
           protein F26G1.9 protein.
          Length = 141

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +1

Query: 478 TEILDKYQQCSSEFSKKHIAARTYLEHN 561
           T++L KY  C+SEF K  +  RT+L+H+
Sbjct: 110 TDVL-KYGFCTSEFDKYRLCFRTHLKHH 136


>U89245-1|AAB49459.1|  612|Caenorhabditis elegans transcription
           factor UNC-37 protein.
          Length = 612

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 404 NSRNPSQQNNTCSINSAGRDASVSLQRSSTNTNNAVPNSPRNILQQEP 547
           N  +PS  +N  + N  GRD++ S+  S  +T +   NS R   QQ+P
Sbjct: 183 NDDHPSTASNGGAANKNGRDSTNSVASSGASTPSIASNS-RARQQQQP 229


>AF039046-14|AAB94214.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 54
           protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 189 APSASCEESQYESKNIQLSVFQCFPENTASC 97
           +PS SC + Q +++N+Q+   QC P    SC
Sbjct: 60  SPSCSCAQPQ-QTQNVQVQTTQCAPACQQSC 89


>AF003141-10|AAK21487.1|  612|Caenorhabditis elegans Uncoordinated
           protein 37 protein.
          Length = 612

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 404 NSRNPSQQNNTCSINSAGRDASVSLQRSSTNTNNAVPNSPRNILQQEP 547
           N  +PS  +N  + N  GRD++ S+  S  +T +   NS R   QQ+P
Sbjct: 183 NDDHPSTASNGGAANKNGRDSTNSVASSGASTPSIASNS-RARQQQQP 229


>AF001272-1|AAB84235.1|  612|Caenorhabditis elegans enhancer of
           split groucho protein.
          Length = 612

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 404 NSRNPSQQNNTCSINSAGRDASVSLQRSSTNTNNAVPNSPRNILQQEP 547
           N  +PS  +N  + N  GRD++ S+  S  +T +   NS R   QQ+P
Sbjct: 183 NDDHPSTASNGGAANKNGRDSTNSVASSGASTPSIASNS-RARQQQQP 229


>AF001271-1|AAB84234.1|  612|Caenorhabditis elegans enhancer of
           split groucho protein.
          Length = 612

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 404 NSRNPSQQNNTCSINSAGRDASVSLQRSSTNTNNAVPNSPRNILQQEP 547
           N  +PS  +N  + N  GRD++ S+  S  +T +   NS R   QQ+P
Sbjct: 183 NDDHPSTASNGGAANKNGRDSTNSVASSGASTPSIASNS-RARQQQQP 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,637,149
Number of Sequences: 27780
Number of extensions: 467783
Number of successful extensions: 1168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3610322468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)