Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E05
         (1275 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1550 - 27818271-27818618,27818743-27818955,27819079-278195...    34   0.28 
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294...    30   4.5  
02_01_0714 + 5339408-5340020,5340117-5340319,5340408-5340605,534...    30   4.5  

>08_02_1550 -
           27818271-27818618,27818743-27818955,27819079-27819597,
           27820239-27820357,27820457-27820763,27820840-27820922,
           27821027-27821204,27821328-27821401,27822078-27822293,
           27822724-27822757
          Length = 696

 Score = 33.9 bits (74), Expect = 0.28
 Identities = 26/89 (29%), Positives = 39/89 (43%)
 Frame = +3

Query: 273 GQSANHAGLIPGLTSASGSLDNLGLNDLSEALGLNSGISSLQDPHLLSKPLNALGVLTSK 452
           G+  +H G  P  T+  G   + GLN  S ++ +  G    +   LL     +L  L  +
Sbjct: 356 GRVFSHGGYFPQATNYGGPFPSFGLNGTS-SIPMEKGRRRGRGNALLCSCNGSLDFLNEQ 414

Query: 453 GQKVPDAIGLEPKPGPVGGSSDEKPALGL 539
            +  P A    PK  P  G  DEKP+ G+
Sbjct: 415 SRG-PRAT--RPKKQPEDGGKDEKPSAGV 440


>12_02_0998 +
           25126114-25126596,25129213-25129339,25129349-25129459,
           25130122-25130270,25130356-25130643,25130753-25130941,
           25131445-25131619,25132219-25132316
          Length = 539

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 535 PRAGFSSELPPTGPGFGSNP 476
           P  G  S +PP GPG+G NP
Sbjct: 312 PPWGHPSNVPPGGPGYGGNP 331


>02_01_0714 +
           5339408-5340020,5340117-5340319,5340408-5340605,
           5340703-5340774,5341197-5341292,5341828-5341907,
           5341993-5342068,5342152-5342362,5342562-5342755,
           5342834-5342939,5343037-5343126,5343470-5344206
          Length = 891

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = +3

Query: 207 KPLGIIGDKRVSGALSTLGLRSGQSANHAGLIPGLTSASGSLDNLGLNDL 356
           KP+  + D  +  +LST    +GQSA     IP  TSA+G+   L  NDL
Sbjct: 563 KPISSL-DMFLQVSLSTSAKTNGQSATLNVRIPSWTSANGAKATLNDNDL 611


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,969,592
Number of Sequences: 37544
Number of extensions: 399383
Number of successful extensions: 965
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3957481680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)