Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E05
         (1275 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonin...    31   1.7  
U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase ...    31   1.7  
U41748-2|AAM51524.1|  639|Caenorhabditis elegans Hypothetical pr...    29   5.3  
U41748-1|AAA83335.3|  696|Caenorhabditis elegans Hypothetical pr...    29   5.3  
U80029-7|ABC71799.1|  201|Caenorhabditis elegans Hypothetical pr...    29   7.0  
Z70750-8|CAA94743.1|  300|Caenorhabditis elegans Hypothetical pr...    29   9.3  

>U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonine
           kinase protein.
          Length = 982

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
 Frame = +3

Query: 213 LGIIGDKRVSGALSTLGLRSGQSANHAGLIPGLTSASGSLDNL-GLNDLSEALGLNSGIS 389
           +G  GD   S + S    RS QS+  AGL+   T+ +G++DN+ G +         +  +
Sbjct: 354 IGRAGDSASSRSASLTSFRSMQSSGGAGLLVS-TNTTGAMDNVHGSSGYGNGSSSTTSSA 412

Query: 390 SLQDP----HLLSKPLNALGVLTSKGQKVPD--AIGLEPKPGP 500
             + P     L S   + +G + S G       AI + P P P
Sbjct: 413 RRRPPIPSQMLSSTSTSGVGTMPSHGSVGASITAIAVNPTPSP 455


>U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase
           protein 18, isoforma protein.
          Length = 982

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
 Frame = +3

Query: 213 LGIIGDKRVSGALSTLGLRSGQSANHAGLIPGLTSASGSLDNL-GLNDLSEALGLNSGIS 389
           +G  GD   S + S    RS QS+  AGL+   T+ +G++DN+ G +         +  +
Sbjct: 354 IGRAGDSASSRSASLTSFRSMQSSGGAGLLVS-TNTTGAMDNVHGSSGYGNGSSSTTSSA 412

Query: 390 SLQDP----HLLSKPLNALGVLTSKGQKVPD--AIGLEPKPGP 500
             + P     L S   + +G + S G       AI + P P P
Sbjct: 413 RRRPPIPSQMLSSTSTSGVGTMPSHGSVGASITAIAVNPTPSP 455


>U41748-2|AAM51524.1|  639|Caenorhabditis elegans Hypothetical
           protein C31H2.1b protein.
          Length = 639

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 218 NHRRQTCQWSSKYLRS*EWPVCKSCRADTWPN*C 319
           N R    +   K +R  +WPVC   RA+ W   C
Sbjct: 140 NKRLNRYEKVKKIIRRTDWPVCHEIRANLWKELC 173


>U41748-1|AAA83335.3|  696|Caenorhabditis elegans Hypothetical
           protein C31H2.1a protein.
          Length = 696

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 218 NHRRQTCQWSSKYLRS*EWPVCKSCRADTWPN*C 319
           N R    +   K +R  +WPVC   RA+ W   C
Sbjct: 197 NKRLNRYEKVKKIIRRTDWPVCHEIRANLWKELC 230


>U80029-7|ABC71799.1|  201|Caenorhabditis elegans Hypothetical
           protein T20D4.10 protein.
          Length = 201

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 21/83 (25%), Positives = 32/83 (38%)
 Frame = +3

Query: 222 IGDKRVSGALSTLGLRSGQSANHAGLIPGLTSASGSLDNLGLNDLSEALGLNSGISSLQD 401
           +  K V+      G   G+S      I GL+      DNL +ND  E            D
Sbjct: 17  VAHKAVATGAEDAGCTDGESLRAFSCIMGLSDFIKKTDNLDMNDKKELKVFK------DD 70

Query: 402 PHLLSKPLNALGVLTSKGQKVPD 470
            H +    N +  L + G+K+P+
Sbjct: 71  CHNVISCFNKIKCLGTDGEKIPE 93


>Z70750-8|CAA94743.1|  300|Caenorhabditis elegans Hypothetical
           protein C50F4.8 protein.
          Length = 300

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 283 ADWPLLRPKVLRAPLTRLSPMIPKGLFSISSGLLF 179
           AD P+  PK+++APL R S ++   + S+   +LF
Sbjct: 265 ADQPISHPKLVQAPLIRASSILSISIASLVPFVLF 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,143,395
Number of Sequences: 27780
Number of extensions: 340854
Number of successful extensions: 657
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3558150178
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)