Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_E04
(1318 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 30 0.82
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 30 0.82
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 1.9
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 2.5
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 2.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 3.3
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 27 4.4
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 5.8
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 27 5.8
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 7.6
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 29.9 bits (64), Expect = 0.82
Identities = 27/92 (29%), Positives = 44/92 (47%)
Frame = -3
Query: 695 VALVTGKGGAAVCSRTVVGLFP**LWL*VRYNVVRPEGQLYHVWKPFLAAAVLFLV*PIT 516
V+ +TG C ++G+ LW+ + + P+G L FL +F + P+
Sbjct: 11 VSNLTGSSSIETCGLLLIGIACNVLWVNMTARNILPKGNL-----GFLVEFFIFCLIPLF 65
Query: 515 DVSYVAYEIEVFPCCVIAAFHFGDCLDAFVSH 420
V YV+ ++ VF C IA+F L +FV H
Sbjct: 66 -VIYVSSKVGVFTLC-IASF-----LPSFVLH 90
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 29.9 bits (64), Expect = 0.82
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Frame = +3
Query: 132 NELPKKIKSRGKDAHMIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAV----MQETKK 299
+EL +++ G +A E++++++ GK Y Q+ ++V T + V ++E K+
Sbjct: 57 HELRAAMRALGFNAEK--SEVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDPLEEIKR 114
Query: 300 AFRKLPNIESAMTALSNLKGV 362
AF + E+ +L NL+ V
Sbjct: 115 AFELFDDDETGKISLRNLRRV 135
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 28.7 bits (61), Expect = 1.9
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +3
Query: 567 HMVELALWTHNIVSDLQPQLLGKEPNNRPAANGGSPLPSDESNL--EPPATNGNGKLVTD 740
+M L++ + S + P +G P+ + A S P+D++ PPA NGN VT
Sbjct: 235 NMESLSIPSRRRPSSIAP--IGTRPSRKEIAFSNSSTPTDQTLRPPNPPAANGNATPVT- 291
Query: 741 CVNEDTTTSCTEDSMDAKAXS 803
VN + + + S + S
Sbjct: 292 AVNNVSAVADSPQSTGSSVSS 312
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 28.3 bits (60), Expect = 2.5
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Frame = +3
Query: 57 QAIKLKAERKTKRPDELIK--LDNWYQNELPKK--IKSRGKDAHMIHEELVQLMKWKQAR 224
Q+++ ++ ++ +EL K D ++ELP+K +S KD H + + +K K+ +
Sbjct: 25 QSLEEHEKKVQQKNEELEKKAADKISRDELPEKQLAQSNDKDKHSVSNPPHKTLKSKRQK 84
Query: 225 GKFYPQLSYLIKVNTPRAVMQETKKA-FRKLPNIESAMTALSNLKG 359
GK + L N P+ ET + F++ + S G
Sbjct: 85 GKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSG 130
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 669 SPLPSDESNLEPPATNGNGKLVTDCVNEDTTTSCTEDSMDAKA 797
S +PS S P T + + T+ N TTT+ +D KA
Sbjct: 339 SSIPSSGSIRSPSLTTTSAQATTNATNNITTTTAAQDENATKA 381
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = +3
Query: 672 PLPSDESNLEPPATNGNGKLVTDCVNEDTTTSCTEDSMDAKAXSPSTPXTPXXP 833
P + ++ PP + + + T+TSCT + + +TP TP P
Sbjct: 307 PTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = +3
Query: 672 PLPSDESNLEPPATNGNGKLVTDCVNEDTTTSCTEDSMDAKAXSPSTPXTPXXP 833
P + ++ PP + + + T+TSCT + + +TP TP P
Sbjct: 361 PTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVP 414
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 27.5 bits (58), Expect = 4.4
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 559 GFHTW*SWPSGRTTLYRTYNHSY*GKSPTTVRLQTAAPPFPVTRAT 696
G+ T + +G TTL T HS PTTV ++T P+P T T
Sbjct: 240 GYTTITTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYPTTVTT 282
Score = 27.5 bits (58), Expect = 4.4
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 559 GFHTW*SWPSGRTTLYRTYNHSY*GKSPTTVRLQTAAPPFPVTRAT 696
G+ T + +G TTL T HS PTTV ++T P+P T T
Sbjct: 318 GYTTVTTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYPTTVTT 360
Score = 27.5 bits (58), Expect = 4.4
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 559 GFHTW*SWPSGRTTLYRTYNHSY*GKSPTTVRLQTAAPPFPVTRAT 696
G+ T + +G TTL T HS PTTV ++T P+P T T
Sbjct: 396 GYTTVTTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYPTTVTT 438
Score = 27.5 bits (58), Expect = 4.4
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 559 GFHTW*SWPSGRTTLYRTYNHSY*GKSPTTVRLQTAAPPFPVTRAT 696
G+ T + +G TTL T HS PTTV ++T P+P T T
Sbjct: 474 GYTTITTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYPTTVTT 516
Score = 27.5 bits (58), Expect = 4.4
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 559 GFHTW*SWPSGRTTLYRTYNHSY*GKSPTTVRLQTAAPPFPVTRAT 696
G+ T + +G TTL T HS PTTV ++T P+P T T
Sbjct: 552 GYTTITTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYPTTVTT 594
Score = 27.5 bits (58), Expect = 4.4
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 559 GFHTW*SWPSGRTTLYRTYNHSY*GKSPTTVRLQTAAPPFPVTRAT 696
G+ T + +G TTL T HS PTTV ++T P+P T T
Sbjct: 630 GYTTVTTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYPTTVTT 672
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.1 bits (57), Expect = 5.8
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +3
Query: 642 NNRPAANGGSPLPSD--ESNLEPPATN---GNGKLVTDCVNEDTTTSCT 773
N+ P A GS PS S + A N G+ K+ DC+NE + C+
Sbjct: 107 NSVPEAAYGSAPPSTFASSAISEEAKNACKGDAKMFADCINEHEFSQCS 155
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 27.1 bits (57), Expect = 5.8
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 54 PQAIKLKAERKTKRPDELIKLDNWYQNE-LP-KKIK 155
P A +KAERKTKRP + NE +P KK+K
Sbjct: 103 PDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVK 138
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 7.6
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 630 GKEPNNRPAANGGSPLPSDESNLEPPATNG--NGKLVTDCVNEDTTTSCTEDSMDAKAXS 803
GK+ +N P +P+P S+ +PP+T G N + + + + TE S ++ S
Sbjct: 259 GKDQSNTPVIKAPAPIPFSVSS-DPPSTMGRSNSAVQSPSYFAHSLVNSTEFSTPNESLS 317
Query: 804 PSTPXTPXXP 833
P P
Sbjct: 318 SLPSILPSIP 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,732,226
Number of Sequences: 5004
Number of extensions: 79243
Number of successful extensions: 219
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 721345614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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