Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E02
         (1263 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    28   2.4  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    28   3.1  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   7.2  

>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 869 GEKNSIQQCWHICWSGXENI 928
           G KNS QQ W + WSG  ++
Sbjct: 146 GSKNSAQQKWVLVWSGSSSV 165


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 247 FLSGCLYSCVKVNFEWPHTTS*FLVSLIII 336
           FLS C+  C   N+ W H     L S++I+
Sbjct: 149 FLSHCVLRCCLSNWSWTHRAMFILHSMVIL 178


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = -1

Query: 1062 HPSSRPXSYNISR*DMTLTWDLPLSWSTLSFLMRPLCWMPPHFLYMFSXPDQQMCQHCWI 883
            HP + P S +I+   ++L++  PLS        RP     P+FL+ F+  +  + + C +
Sbjct: 69   HPDTLPTSLSINPKKLSLSFSFPLSQK------RPF----PNFLHPFTGSELSLFR-CLL 117

Query: 882  LFF 874
            LFF
Sbjct: 118  LFF 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,376,218
Number of Sequences: 5004
Number of extensions: 86363
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 685576410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)