Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_E01
         (1225 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   318   1e-87
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   317   2e-87
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    28   2.3  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    27   4.0  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    27   4.0  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   4.0  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    27   4.0  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   5.3  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   7.0  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    26   9.3  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  318 bits (780), Expect = 1e-87
 Identities = 143/206 (69%), Positives = 168/206 (81%)
 Frame = +3

Query: 75  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFXLGKKRANVDDFPLCVHLVSDEYEQL 254
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIF LG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 255 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 434
           +SEALEA RIC NKYLVK  GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120

Query: 435 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 614
           KP G VARV IGQ +MSVR+ D  +A  IEALRR ++KFPG+Q+I VSKKWGF++Y RDE
Sbjct: 121 KPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDE 180

Query: 615 FEKLREEGRLANDGCIVQYRPEHGPL 692
           + + R  G +  DGC  ++  + G L
Sbjct: 181 YIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  317 bits (779), Expect = 2e-87
 Identities = 143/206 (69%), Positives = 168/206 (81%)
 Frame = +3

Query: 75  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFXLGKKRANVDDFPLCVHLVSDEYEQL 254
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIF LG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 255 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 434
           +SEALEA RIC NKYLVK  GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120

Query: 435 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 614
           KP G VARV IGQ +MSVR+ D  +A  IEALRR ++KFPG+Q+I VSKKWGF++Y RDE
Sbjct: 121 KPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDE 180

Query: 615 FEKLREEGRLANDGCIVQYRPEHGPL 692
           + + R  G +  DGC  ++  + G L
Sbjct: 181 YIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
 Frame = +3

Query: 345 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 512
           L P    R+     C        G     GK +G      AR+ IG+ +  +      K 
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158

Query: 513 QVIEALRRAKFKFPGRQKIYVSK 581
               AL++A F  PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 644 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 513
           +A  F ++L    FI C +P+L Y+  +  G  +   +  + DL
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 644 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 513
           +A  F ++L    FI C +P+L Y+  +  G  +   +  + DL
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 644 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 513
           +A  F ++L    FI C +P+L Y+  +  G  +   +  + DL
Sbjct: 236 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 644 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 513
           +A  F ++L    FI C +P+L Y+  +  G  +   +  + DL
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 99  YRYCKNKPYPKSRFCRGVPDP-KIRIFXLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 275
           Y+   N     ++FC  V +  KI      +KRA +D   LC+  +S + E ++  +LE+
Sbjct: 34  YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93

Query: 276 G 278
           G
Sbjct: 94  G 94


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 449  STLRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHAD 333
            +T +LAKR T PSL P  S+    H I  +  ++ KS A+
Sbjct: 957  TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAN 996


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 487 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 645
           C L+T         C +  + SP+++RS Y  +G++ S  +  +     RAA+
Sbjct: 17  CLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,903,327
Number of Sequences: 5004
Number of extensions: 77007
Number of successful extensions: 235
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)