Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_E01
(1225 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 314 7e-86
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 301 5e-82
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 288 7e-78
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 2.4
02_02_0317 + 8893593-8894207 31 2.4
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 5.6
07_03_1509 - 27246721-27247350 29 7.4
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 314 bits (772), Expect = 7e-86
Identities = 144/206 (69%), Positives = 165/206 (80%)
Frame = +3
Query: 75 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFXLGKKRANVDDFPLCVHLVSDEYEQL 254
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+ +G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 255 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 434
SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 435 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 614
KPQGT ARV IGQ ++SVR + EALRRAKFKFPGRQKI S+KWGFTK+ R+E
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREE 180
Query: 615 FEKLREEGRLANDGCIVQYRPEHGPL 692
+ KL+ EGR+ +DG Q HG L
Sbjct: 181 YVKLKAEGRIMSDGVNAQLLGSHGRL 206
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 301 bits (740), Expect = 5e-82
Identities = 136/200 (68%), Positives = 159/200 (79%)
Frame = +3
Query: 87 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFXLGKKRANVDDFPLCVHLVSDEYEQLSSEA 266
P RCYR KNKPYPKSR+CRGVPDPKIRIF +G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 267 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 446
LEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTG 431
Query: 447 TVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKL 626
T ARVRIGQ ++SVR D A EALRRAKFKFPGRQ++ S KWGFT+++RDE+ KL
Sbjct: 432 TCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKL 491
Query: 627 REEGRLANDGCIVQYRPEHG 686
+ EGR+ DG + HG
Sbjct: 492 KSEGRIVPDGVNAKLLTRHG 511
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 288 bits (706), Expect = 7e-78
Identities = 130/187 (69%), Positives = 151/187 (80%)
Frame = +3
Query: 96 CYRYCKNKPYPKSRFCRGVPDPKIRIFXLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 275
CYR KNKPYPKSR+CRGVPDPKIRI+ +G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 276 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 455
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT A
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 456 RVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREE 635
RV IGQ ++SVR EALRRAKFKFPGRQKI S+KWGFTK+ RDE+ +L+ E
Sbjct: 124 RVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSE 183
Query: 636 GRLANDG 656
GR+ DG
Sbjct: 184 GRIMPDG 190
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 2.4
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 478 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 386
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>02_02_0317 + 8893593-8894207
Length = 204
Score = 30.7 bits (66), Expect = 2.4
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -2
Query: 723 GSQPEPSSKRREVHVP---GGTARCSRHWRGGP 634
G +P P++ R +HVP GG R RHWR P
Sbjct: 3 GRRPRPAAGTR-IHVPQPCGGEIRWERHWRPDP 34
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 213 PLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 317
P C +HL SD Y S E ++AG+ C L K G
Sbjct: 592 PRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>07_03_1509 - 27246721-27247350
Length = 209
Score = 29.1 bits (62), Expect = 7.4
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +1
Query: 466 LDNPSCPCALVTGGRHRSSRL---CAVP--SSSSPDVKRSTYQRSGVS 594
L P PC RH RL +P +SSSP+++R+T R+G S
Sbjct: 132 LQPPLSPCLSAGRRRHHLPRLHDAALIPGITSSSPELRRNTVARAGFS 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,680,155
Number of Sequences: 37544
Number of extensions: 584662
Number of successful extensions: 1595
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3759607596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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