Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_D23
(1241 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 46 1e-05
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 42 2e-04
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 33 0.11
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 30 0.58
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 28 3.1
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 27 4.1
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 5.4
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 26 9.4
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 26 9.4
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 46.0 bits (104), Expect = 1e-05
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +3
Query: 516 GDGSNKSNPKIVASEIGTKSEPIWHEVKNQDGSSYYWNTITSETTWEQPDE 668
G SN+ P S+ WHEVK +D YY+N++T ++ WE+P+E
Sbjct: 16 GFTSNQEGPSAAPSKTVASD---WHEVKTEDSRVYYYNSVTRKSVWEKPEE 63
Score = 37.9 bits (84), Expect = 0.003
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 573 SEPIWHEVKNQDGSSYYWNTITSETTWEQPDEY 671
S+ W E DG Y++N T E+ W+ PDEY
Sbjct: 73 SKLAWKEYATADGKKYWYNVNTRESVWDIPDEY 105
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 41.5 bits (93), Expect = 2e-04
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +3
Query: 228 MTEYWKSQARKYCEFCKCWFADNKVSTSFHENGKKHKDKVQEHISKLSKKS 380
M +YWKS + YC++C+ + D + HE KH+D +++ + + + +
Sbjct: 1 MADYWKSIPKYYCKYCQIFVKDTPFARRSHEQTYKHQDAIKKVMDDIHRSN 51
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 32.7 bits (71), Expect = 0.11
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 528 NKSNPKIVASEIGTKSEPIWHEVKNQDGSSYYWNTITSETTWEQPDE 668
N++ P I SE G + IW + + Y+W+T+T+ T+W P E
Sbjct: 178 NQAQPSIAWSE-GHRIAAIWDPSQQ---AYYFWDTLTNTTSWNNPLE 220
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 30.3 bits (65), Expect = 0.58
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 579 PIWHEVKNQDGSSYYWNTITSETTWEQP 662
P W E K G YYWN ++T+++P
Sbjct: 7 PGWTEHKAPSGIPYYWNAELKKSTYQRP 34
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 27.9 bits (59), Expect = 3.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 470 EQCRFNFTEYKPNVGGRWK 526
+ C+FN ++Y P G +WK
Sbjct: 313 DACKFNISDYDPRKGFKWK 331
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = +3
Query: 471 NNADLTSQNINQMLGGDGSNKSNPKIVASEIGTKSEPIWHEVKNQDGSSYYWNTITSETT 650
+N SQ +N + SNP ++ S+ G W G Y+ + T TT
Sbjct: 275 HNTSSDSQRLNHQ-NRHLPDDSNPSLMQSDSGNDLPFGWEMRYTDTGRPYFVDHNTRTTT 333
Query: 651 WEQP 662
W P
Sbjct: 334 WVDP 337
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +1
Query: 232 LNIGNHKLGNTVNFVNVGLLTIKFQHHSTKMAKNTKIRSKNIFR 363
LN+G+H + + F++V ++ I F + + K+ + SKN ++
Sbjct: 504 LNLGDHWATSVLGFISVAMVPIPFIFY--RFGKSIRAWSKNAYK 545
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 9.4
Identities = 6/23 (26%), Positives = 16/23 (69%)
Frame = +3
Query: 579 PIWHEVKNQDGSSYYWNTITSET 647
P+ ++++ G +WNT+T+++
Sbjct: 529 PLGYDIREHPGGQQFWNTLTAKS 551
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 804 KERAVKKDESVLTKSAVDYGPAPRASKPYGTWTEXVKEP 920
++ A ++ S L K Y RAS PY T+T+ + +P
Sbjct: 34 EQSAYHRERSPLRKRGNYYDDRTRASGPYPTFTKPLIDP 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,569,515
Number of Sequences: 5004
Number of extensions: 62028
Number of successful extensions: 207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 675349698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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