Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_D23
(1241 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0784 - 5868545-5868888,5868990-5869085,5870313-5870394,587... 69 6e-12
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 42 8e-04
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 38 0.016
08_02_1461 - 27299891-27301870 33 0.47
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 32 1.1
12_02_0454 + 19199063-19200757,19202201-19202287 30 3.3
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 29 5.7
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 29 5.7
>06_01_0784 -
5868545-5868888,5868990-5869085,5870313-5870394,
5870639-5870839,5871810-5871818
Length = 243
Score = 69.3 bits (162), Expect = 6e-12
Identities = 31/83 (37%), Positives = 46/83 (55%)
Frame = +3
Query: 228 MTEYWKSQARKYCEFCKCWFADNKVSTSFHENGKKHKDKVQEHISKLSKKSAKDFXXXXX 407
MTEYW SQ K+C+FCK + A+N +S HE GK+HKD V + ++ + K+ A
Sbjct: 1 MTEYWVSQGNKWCDFCKIYIANNPLSIRTHEIGKRHKDNVTKRLATMQKEGAAKEKEQQQ 60
Query: 408 XXXXXXXXXAAAMTAYIKDVQNN 476
A A +Y KD++N+
Sbjct: 61 AARALKQIEAKAKKSYQKDLENS 83
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 42.3 bits (95), Expect = 8e-04
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +3
Query: 549 VASEIGTKSEPIWHEVKNQDGSSYYWNTITSETTWEQPD 665
+ +IG + I HE NQ YYWNT+T ET+WE P+
Sbjct: 169 IVGDIGGNWKTIMHEQSNQ---CYYWNTVTGETSWEIPN 204
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 37.9 bits (84), Expect = 0.016
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 465 VQNNADLTSQNINQMLGGDGSNKSNPKIVASEIGTKSEPIWHEVKNQDGSSYYWNTITSE 644
VQ+ QN+ + G S+ + + S W E + DG YY+N T +
Sbjct: 71 VQSWGTAPGQNVPLVQPGHQPMSSSATMPSINSSETSSSDWQEHTSADGKKYYYNKKTRQ 130
Query: 645 TTWEQPDE 668
++WE+P E
Sbjct: 131 SSWEKPAE 138
Score = 36.7 bits (81), Expect = 0.038
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 585 WHEVKNQDGSSYYWNTITSETTWEQPDE 668
W E Q+G YY+N +T ++ W PDE
Sbjct: 152 WKEFTTQEGRKYYYNKVTKQSKWTIPDE 179
>08_02_1461 - 27299891-27301870
Length = 659
Score = 33.1 bits (72), Expect = 0.47
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 920 SKNXXPSATEDKELPPPPVVMXLKSSXXXNVSXPGXRPVXFK 1045
S++ P+A +DKE+PPPP + + PG PV K
Sbjct: 10 SRSKNPAAGDDKEMPPPPPPPPANGAEREFMCIPGCVPVRVK 51
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 31.9 bits (69), Expect = 1.1
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 585 WHEVKNQD-GSSYYWNTITSETTWEQP 662
W E +Q G YY+NT T T WE P
Sbjct: 239 WEEALDQSTGQKYYYNTNTQATQWEPP 265
Score = 30.3 bits (65), Expect = 3.3
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 579 PIWHEVKNQ-DGSSYYWNTITSETTWEQP 662
P W E K+ G+SY++N T T W++P
Sbjct: 190 PGWVEAKDPTSGASYFYNQSTGTTQWDRP 218
>12_02_0454 + 19199063-19200757,19202201-19202287
Length = 593
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 243 KSQARKYCEFCKCWFADNKVSTSFHENGKKHKDKVQE 353
K + YC C F +K + HE KKH+DKV E
Sbjct: 305 KRKEELYCVACNKKFKSDKQWKN-HEQSKKHRDKVSE 340
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 29.5 bits (63), Expect = 5.7
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +3
Query: 606 DGSS-YYWNTITSETTWEQP 662
DGS+ YYWN T+ET +E+P
Sbjct: 31 DGSTLYYWNPDTNETQYERP 50
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 29.5 bits (63), Expect = 5.7
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = +3
Query: 435 AAAMTAYIKDVQNNADLTSQNINQMLGGDGSNKSNP---KIVASEIGTKSEPIWHEVKNQ 605
++++TAY+ +Q T+ ++ L P ++ GT W V
Sbjct: 445 SSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTRFRLRDKLAGTD----WSIVTTS 500
Query: 606 DGSSYYWNTITSETTWEQPDEYFSIV 683
DG YY++ ++W+ P E ++
Sbjct: 501 DGKKYYYDNKLKVSSWQLPPEVAELI 526
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,079,456
Number of Sequences: 37544
Number of extensions: 384384
Number of successful extensions: 1180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3829445508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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