Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_D22
(1303 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.58
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.58
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.58
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 31 1.3
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 30 4.1
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 5.4
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 7.2
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 7.2
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 25 7.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 9.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 9.5
AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical ... 29 9.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 9.5
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.7 bits (71), Expect = 0.58
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = -1
Query: 970 PXXPXGFFFXPXPXXGGXPPPPXXXXPPGXXKXXXXXPXGXXXXXXXXXXXPPXG 806
P P G P P GG PPPP PP P G PP G
Sbjct: 273 PPPPTGS--PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 325
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.7 bits (71), Expect = 0.58
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = -1
Query: 970 PXXPXGFFFXPXPXXGGXPPPPXXXXPPGXXKXXXXXPXGXXXXXXXXXXXPPXG 806
P P G P P GG PPPP PP P G PP G
Sbjct: 294 PPPPTGS--PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 346
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.58
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = -1
Query: 970 PXXPXGFFFXPXPXXGGXPPPPXXXXPPGXXKXXXXXPXGXXXXXXXXXXXPPXG 806
P P G P P GG PPPP PP P G PP G
Sbjct: 279 PPPPTGS--PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 331
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 31.5 bits (68), Expect = 1.3
Identities = 31/126 (24%), Positives = 42/126 (33%), Gaps = 8/126 (6%)
Frame = +2
Query: 413 GXXFFFXXGGGGGXNXFXKKKKXGGGXXGDIFGXXXXXKXKKK------GRXGXXGGXXX 574
G F G GG ++ GGG GD +G + GR G
Sbjct: 184 GGDRFNDRGSRGGDRYGGDRRGGGGGGGGDRYGGGGGDRYGGDRYGGGGGRRGSPDRRGG 243
Query: 575 ISXGGGXXXVQKKGGXKXKXXFXKGX*KDXXXXGGGGGGF*XXDPXXKKKKK--XXXXXG 748
GGG + GG D GGGGG DP +++ + G
Sbjct: 244 FRSGGGGGGYMRSGGGGGGPDRRDHRDNDR---NGGGGGHRPYDPSFRRRVESYGSGNSG 300
Query: 749 GGGXKK 766
GGG ++
Sbjct: 301 GGGGRR 306
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 29.9 bits (64), Expect = 4.1
Identities = 29/90 (32%), Positives = 29/90 (32%)
Frame = +2
Query: 425 FFXXGGGGGXNXFXKKKKXGGGXXGDIFGXXXXXKXKKKGRXGXXGGXXXISXGGGXXXV 604
FF GGGGG GGG G G G G GG GGG
Sbjct: 50 FFGGGGGGG----------GGGGGGGFGGGNGGFGGGGGGNYGGGGGNQG-GGGGGGFNF 98
Query: 605 QKKGGXKXKXXFXKGX*KDXXXXGGGGGGF 694
GG G GGGGGGF
Sbjct: 99 NDIGGLINSMGGGGGG---GQRQGGGGGGF 125
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 5.4
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -1
Query: 994 FFFPXXXXPXXPXGFFFXPXPXXGGXPPPP 905
FF P P P GF P P GG PPPP
Sbjct: 63 FFIP----PPVPNGFI-PPPPGPGGIPPPP 87
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.1 bits (62), Expect = 7.2
Identities = 20/72 (27%), Positives = 20/72 (27%)
Frame = -1
Query: 961 PXGFFFXPXPXXGGXPPPPXXXXPPGXXKXXXXXPXGXXXXXXXXXXXPPXGXXXXXFXX 782
P F F P P G PPPP G P PP F
Sbjct: 290 PPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPP---HPMMFRG 346
Query: 781 XXXXXFFXAPPP 746
FF PPP
Sbjct: 347 GPYPPFFPPPPP 358
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.1 bits (62), Expect = 7.2
Identities = 20/72 (27%), Positives = 20/72 (27%)
Frame = -1
Query: 961 PXGFFFXPXPXXGGXPPPPXXXXPPGXXKXXXXXPXGXXXXXXXXXXXPPXGXXXXXFXX 782
P F F P P G PPPP G P PP F
Sbjct: 290 PPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPP---HPMMFRG 346
Query: 781 XXXXXFFXAPPP 746
FF PPP
Sbjct: 347 GPYPPFFPPPPP 358
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 24.6 bits (51), Expect(2) = 7.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 436 GGGGGGXXFXKKKKXRGGXXGG 501
GGGGGG F GG GG
Sbjct: 58 GGGGGGGGFGGGNGGFGGGGGG 79
Score = 22.6 bits (46), Expect(2) = 7.8
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +1
Query: 424 FFXXGGGGGG 453
FF GGGGGG
Sbjct: 50 FFGGGGGGGG 59
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 9.5
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 940 PXPXXGGXPPPPXXXXPPGXXKXXXXXP 857
P P GG PPPP PPG K P
Sbjct: 761 PPPPPGGCPPPP-PPPPPGGFKGGPPPP 787
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 9.5
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 940 PXPXXGGXPPPPXXXXPPGXXKXXXXXP 857
P P GG PPPP PPG K P
Sbjct: 761 PPPPPGGCPPPP-PPPPPGGFKGGPPPP 787
>AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical
protein Y48B6A.3 protein.
Length = 892
Score = 28.7 bits (61), Expect = 9.5
Identities = 28/106 (26%), Positives = 37/106 (34%)
Frame = +2
Query: 437 GGGGGXNXFXKKKKXGGGXXGDIFGXXXXXKXKKKGRXGXXGGXXXISXGGGXXXVQKKG 616
GGGGG + GGG G + GR G GG Q++G
Sbjct: 771 GGGGGYRGNSYDDRRGGGGGGGGYNDRQDFGRNYGGRDG--GGPQRYHD----QQQQRQG 824
Query: 617 GXKXKXXFXKGX*KDXXXXGGGGGGF*XXDPXXKKKKKXXXXXGGG 754
G + G GGGGGG P + +++ GGG
Sbjct: 825 GYQGGGY--GGGYGGGGGGGGGGGGGSYHQPYNQDQRRGGRGGGGG 868
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 9.5
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 940 PXPXXGGXPPPPXXXXPPGXXKXXXXXP 857
P P GG PPPP PPG K P
Sbjct: 344 PPPPPGGCPPPP-PPPPPGGFKGGPPPP 370
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,168,863
Number of Sequences: 27780
Number of extensions: 320051
Number of successful extensions: 1837
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3631930622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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