Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_D19
(1279 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 38 0.022
03_02_0484 + 8805053-8805538 36 0.052
03_02_0483 - 8804021-8804485 36 0.052
07_03_1498 + 26995209-26995752,26995945-26996513 32 0.84
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 31 1.9
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 31 2.6
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65... 31 2.6
08_01_0380 - 3376475-3377116,3377722-3377919,3378381-3378556,337... 30 4.5
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 7.9
>03_02_0485 - 8808139-8808618
Length = 159
Score = 37.5 bits (83), Expect = 0.022
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Frame = +2
Query: 473 DVSQYTPEEIVVKTVDNKLLVHA-----KHEEKSDT-KSVYR---EYNREFLLPKGTNPE 625
DV EE+ V+ D +L + + EEKSD V R ++ R F LP+ T PE
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 626 AIKSSLSRDGVLTVEAP 676
IK+S+ +GVLTV P
Sbjct: 128 QIKASM-ENGVLTVTVP 143
>03_02_0484 + 8805053-8805538
Length = 161
Score = 36.3 bits (80), Expect = 0.052
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Frame = +2
Query: 473 DVSQYTPEEIVVKTVDNKLLVHA-----KHEEKSDT-KSVYR---EYNREFLLPKGTNPE 625
DV EE+ V+ D +L + + EEK+D V R ++ R F LP+ T PE
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 626 AIKSSLSRDGVLTVEAP 676
IK+S+ +GVLTV P
Sbjct: 130 QIKASM-ENGVLTVTVP 145
>03_02_0483 - 8804021-8804485
Length = 154
Score = 36.3 bits (80), Expect = 0.052
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Frame = +2
Query: 473 DVSQYTPEEIVVKTVDNKLLVHA-----KHEEKSDT-KSVYR---EYNREFLLPKGTNPE 625
DV EE+ V+ D +L + + EEK+D V R ++ R F LP+ T PE
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 626 AIKSSLSRDGVLTVEAP 676
IK+S+ +GVLTV P
Sbjct: 123 QIKASM-ENGVLTVTVP 138
>07_03_1498 + 26995209-26995752,26995945-26996513
Length = 370
Score = 32.3 bits (70), Expect = 0.84
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +2
Query: 383 RQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSD 562
++L P HW + P + + G G+ RF + TP E D+ + VH+ + SD
Sbjct: 245 KELEAPQHWSEMRCPQLANLGSGRFCIARFFHTWTTPMEPNSFGYDS-IKVHSFSDFDSD 303
Query: 563 TKSVYREYNREFLLPKGTN 619
+ S+ E F + GT+
Sbjct: 304 SDSIEFE-EHSFTVLTGTD 321
>01_06_1201 - 35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 31.1 bits (67), Expect = 1.9
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 184 EKYPHQA---WRFFGYRYRILKHQRALRCRNEEDGRRNEQIQIRTHEQRKQQFLQE 342
EKYP A RF G+R R+L + L E+G I +E+RK +FL+E
Sbjct: 1213 EKYPVMAELIHRFQGFRERLLADPKFLHRLAIEEGISITTTLIAQYEKRKGRFLEE 1268
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 30.7 bits (66), Expect = 2.6
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Frame = +2
Query: 446 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSV------YRE-----YNR 592
D K +++RFD+ + EE+ V D+ L++ +H+++ + ++E Y+
Sbjct: 140 DDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDM 199
Query: 593 EFLLPKGTNPEAIKSSLSRDGVLTVEAP 676
LP + +++ L ++GVL V P
Sbjct: 200 RLALPDECDKSKVRAEL-KNGVLLVTVP 226
>03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-653886,
654027-654247,654395-654533,654628-654710,654824-655036,
655099-655494,655587-655758,656085-656276,656363-656569,
656661-656753,656957-657156,657329-657838,658114-658184,
658322-658963,659057-659207,659425-659665
Length = 1360
Score = 30.7 bits (66), Expect = 2.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -2
Query: 231 SVSITEKSPSLMGIFLLRPLSAIFHVICRVEI-VETKQTLKRSRVNTFHWNNTH 73
S+ I+ S ++ ++L+P A IC + V++KQ+LK TF W +TH
Sbjct: 884 SLLISVGSKQVLTTWVLQPKVAENRHICSSGLDVDSKQSLKGDSAMTFQWLSTH 937
>08_01_0380 -
3376475-3377116,3377722-3377919,3378381-3378556,
3378681-3379703,3380476-3380593
Length = 718
Score = 29.9 bits (64), Expect = 4.5
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 473 DVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGT 616
DVS+ IVV +DNK+L A H S S +R + + +LP T
Sbjct: 41 DVSRSMDGSIVVHGLDNKILGDA-HPSSSSATSCFRTQSFDTVLPAST 87
>04_03_0018 -
9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 7.9
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 489 LPKRSLLRLSTTNYWSTPNTRRNLIRNLCTE 581
L ++S L LST++ +S + RRNL+R+ T+
Sbjct: 715 LKRKSFLSLSTSSIFSPLSPRRNLLRSTSTD 745
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,026,638
Number of Sequences: 37544
Number of extensions: 483277
Number of successful extensions: 1428
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3969121332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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