Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_D18
         (1360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.052
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.28 
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    29   2.0  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   2.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   6.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   7.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.052
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 911 PPPPXGXPXXGXGXGPPPPPGXXXGXXFFFXP 816
           PPPP G    G    PPPPP    G   ++ P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 29.9 bits (64), Expect = 0.85
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 908 PPPXGXPXXGXGXGPPPPP 852
           PPP   P    G GPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 911 PPPPXGXPXXGXGXGPPPPP 852
           PPPP      G G  PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781



 Score = 28.3 bits (60), Expect = 2.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 911 PPPPXGXPXXGXGXGPPPPP 852
           PPPP   P       PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 459 PPPXGXGGXFXGXPPPPP 512
           PPP G  G     PPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 599 PFXGXPXXPXXGGXXPPPPP 540
           P    P  P  GG  PPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPP 767


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = -1

Query: 880 GGGXAPPPXPXGXXXXFFFXXXXXKXGGPGGFFXGXPXFFFXXGG 746
           GG   PPP P G      F       GG GGF  G   F    GG
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -3

Query: 167 KKXKKXKKKKXXXKKKKXKXKXKKNXKKXXEXXXKKKNK 51
           KK +K  KKK    KKK K    K  K       +KK K
Sbjct: 190 KKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKK 228



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 167 KKXKKXKKKKXXXKKKKXKXKXKKNXKKXXEXXXKKKNK 51
           +K  K KKK+   K K+   K +K+     E   KKK K
Sbjct: 193 EKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIK 231



 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -3

Query: 167 KKXKKXKKKKXXXKKKKXKXKXKKNXKKXXEXXXKKKNK 51
           K  K  KKKK   KKK  +   KK      +   KKK K
Sbjct: 191 KLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKK 229


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +3

Query: 51  FVFFFXXXFXXFFXVFFXFXFXFFFFXXXFFFFXF 155
           F+FF    F  +F  F    F FFFF     F  F
Sbjct: 135 FLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSF 169


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 462 PPXGXGGXFXGXPPPPPXKKTXXXG 536
           PP G G      PPPPP  ++   G
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAG 349


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 911 PPPPXGXPXXGXGXGPPPPP 852
           PPPP   P       PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,918
Number of Sequences: 5004
Number of extensions: 35662
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 749166106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)