Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_D15
         (1293 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258...    32   1.1  
10_08_0104 + 14824122-14824178,14824274-14824318,14824419-148245...    29   8.0  

>01_01_0322 -
           2589074-2589121,2589214-2589296,2589414-2589492,
           2589622-2589716,2590198-2590330,2590601-2590685,
           2591040-2591163,2591297-2591372,2594305-2594319
          Length = 245

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 19/55 (34%), Positives = 32/55 (58%)
 Frame = +2

Query: 74  KMLVKLSFPWLLVGISRRRHAPVQRN*LLRNGMRAAAPTEALSSTAPGGQGIQQR 238
           +MLV LS PW+++G S RR    + N  + + + A A ++ L   A  G+ ++QR
Sbjct: 74  EMLVNLSIPWVILGHSERRSLLGESNEFVGDKV-AYALSQGLKVIACVGETLEQR 127


>10_08_0104 +
           14824122-14824178,14824274-14824318,14824419-14824536,
           14825522-14825581,14825783-14825891,14825972-14826197,
           14826274-14826390,14826510-14826611
          Length = 277

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = -2

Query: 236 AVVFLVLRERWKTTLRSARQHAFRYEVVNFFAPEHVDVGIFRQEAKGTIISLTFLTRAHA 57
           A + L      KT + + +QH F     + F+ ++ D+ +FR   + T +  TF+ R   
Sbjct: 128 ANIILTKHNDEKTLVEAVKQHFF---AEHLFSDQYQDMPLFRWRLRHTYVDSTFMERVKE 184

Query: 56  MTPXNXLXSXG 24
           +   N     G
Sbjct: 185 IEVKNSSNGSG 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,707,673
Number of Sequences: 37544
Number of extensions: 430957
Number of successful extensions: 1031
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4027319592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)