Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_D15
         (1293 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    26   0.62 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   2.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   5.8  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 26.2 bits (55), Expect = 0.62
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -1

Query: 198 NASVGAAARIPLRSS*FLCTGACRRRDIPTRSQGNDNFTNIFNTSARYD 52
           N S+       +R S  +C G  R +    R     N  NI+N S+R +
Sbjct: 337 NPSITRTGLSSVRDSSIICGGNKRSQVFRGRDANRQNSCNIYNASSRME 385


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 759 PKICYNIFKQHKTQ*FY-FNKYNNHDYSKY 673
           PKI  ++   +K   +  +N YNN++Y+ Y
Sbjct: 312 PKIISSLSNNYKYSNYNNYNNYNNNNYNNY 341


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 348 HKQFSFNSRHIQVKRAVSDTVFCSYVSSWFCLVSSSLRCCIPCPP 214
           H+  S    H +    +S++ + SYV+S +   +     C P PP
Sbjct: 356 HQTQSLQHLHYRQPPTLSES-YSSYVNSMYASGAQFATPCTPSPP 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 270,053
Number of Sequences: 438
Number of extensions: 5809
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44423310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)