Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_D13
         (1306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...   225   8e-60
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    28   2.5  
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    27   4.3  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   7.5  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    27   7.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   7.5  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    26   10.0 

>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score =  225 bits (551), Expect = 8e-60
 Identities = 104/182 (57%), Positives = 134/182 (73%)
 Frame = +1

Query: 349 SKVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANL 528
           +K  MR+V +P HR TPL+  W K++ P+VEHLLLQVR NTK+R+VE++    TKD   L
Sbjct: 77  AKPQMRRVPIPPHRMTPLRNVWPKLYPPLVEHLLLQVRMNTKSRSVELRESKATKDPGAL 136

Query: 529 QKAADFVKAFIYGFEVXXXXXXXXXXXXFVESFEVKDVKTLNGDHLSRAIGRLAGKAGRT 708
           QK  DFV+AF  GF++            ++++FE+KDVKTL GDHLSRAIGR+AG+ G+T
Sbjct: 137 QKGMDFVQAFALGFDIDDAIALLRLDDLYIDTFEIKDVKTLQGDHLSRAIGRIAGQGGKT 196

Query: 709 KFTIENVTKTRIVLADSKIHILGSYQNIALARRAICNLIMGSPPSKVYGNLRNVANRVAE 888
           KF IEN ++TRIVLADSKIHILG + NI +A+ A+ +LI+GSPP KVY NLRN A R  E
Sbjct: 197 KFAIENASRTRIVLADSKIHILGGFTNIRIAKDAVVSLILGSPPGKVYANLRNAAARAKE 256

Query: 889 RI 894
           RI
Sbjct: 257 RI 258


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 682 RLAGKAGRTKFTIENVTKTRIVLADSKIHILGSYQNIALARRAI 813
           RL G  G+T   +E +T+  I++  + + ++G Y+ +   RR +
Sbjct: 157 RLIGTNGQTLKALELLTQCYILVQGTTVAVMGGYKGLKEVRRIV 200


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -2

Query: 270 LFNLHTISGVICSFALYIFKLHRLFSWQKIINTY 169
           +F+++ I G+I S+ L IF++ RL S Q +  +Y
Sbjct: 27  IFSVYIIIGLIISYLLQIFRIVRLGSSQGLSFSY 60


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 928 NIDLFIIHFTTI---FFQPLC*RRFSNSRKLLKAEIPLSNYI*PVLPKQYSDN 779
           NI++   +FT +   +FQP+    F N+    KA I L + + P   KQ+  N
Sbjct: 476 NIEI-AYYFTDVLLKWFQPIIRYEFDNALIFYKASISLVSVLAPAAQKQFLSN 527


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 479 LVFVLNLTCSNKCSTIGVNIFSQLSLSGVYL 387
           L F L  TC  +  ++ +N F     SG+YL
Sbjct: 25  LTFFLLTTCQLRILSLSINAFCVFGASGIYL 55


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +1

Query: 1153 PVXGGGGXXXLXXPPPPGXGXXFXPLPFPP 1242
            P+  G     L  PPPP        +P PP
Sbjct: 326  PIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 154 METENISVDDFLPAKKTMKLKNIKRKATDDTGDGMEVEEPT 276
           ++  N   D F+P  KT  L N+      +TG+ +   EPT
Sbjct: 427 IDPSNQPSDQFIPLLKTCALCNLSTVNQTETGEWVVKGEPT 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,070,287
Number of Sequences: 5004
Number of extensions: 73056
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 713396902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)